Gene annotation
Transcriptome id Sobic.003G435100.1
Synonym Sb03g046600
Functional annotation expressed protein
UniProt C5XIM1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g73024.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G435100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
2 Sobic.003G234101 - -
3 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
4 Sobic.006G161900 expressed protein K08331: autophagy-related protein 13
5 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
6 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
7 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
8 Sobic.010G171300 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
9 Sobic.001G170900 expressed protein -
10 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
11 Sobic.003G006100 Leucine Rich Repeat family protein, expressed -
12 Sobic.010G240700 PPR repeat containing protein, expressed -
13 Sobic.004G193600 - -
14 Sobic.004G052401 - -
15 Sobic.010G240500 cadmium/zinc-transporting ATPase, putative, expressed -
16 Sobic.010G240600 - -
17 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
18 Sobic.007G009600 expressed protein -
19 Sobic.005G056201 - -
20 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -


Gene co-expression network
sample Sobic003G435100 Sobic003G435100 Sobic007G075700 Sobic007G075700 Sobic003G435100--Sobic007G075700 Sobic003G234101 Sobic003G234101 Sobic003G435100--Sobic003G234101 Sobic003G191000 Sobic003G191000 Sobic003G435100--Sobic003G191000 Sobic006G161900 Sobic006G161900 Sobic003G435100--Sobic006G161900 Sobic001G343400 Sobic001G343400 Sobic003G435100--Sobic001G343400 Sobic010G052300 Sobic010G052300 Sobic003G435100--Sobic010G052300 Sobic006G249400 Sobic006G249400 Sobic003G435100--Sobic006G249400 Sobic010G171300 Sobic010G171300 Sobic003G435100--Sobic010G171300 Sobic001G170900 Sobic001G170900 Sobic003G435100--Sobic001G170900 Sobic010G240700 Sobic010G240700 Sobic007G075700--Sobic010G240700 Sobic007G075700--Sobic003G234101 Sobic010G240600 Sobic010G240600 Sobic007G075700--Sobic010G240600 Sobic010G240500 Sobic010G240500 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic003G234101--Sobic007G075700 Sobic003G234101--Sobic010G052300 Sobic003G234101--Sobic010G240700 Sobic003G234101--Sobic001G343400 Sobic003G234101--Sobic010G171300 Sobic003G234101--Sobic010G240500 Sobic003G234101--Sobic003G435100 Sobic003G234101--Sobic006G249400 Sobic003G234101--Sobic010G240600 Sobic003G191000--Sobic007G075700 Sobic003G191000--Sobic001G170900 Sobic005G056201 Sobic005G056201 Sobic003G191000--Sobic005G056201 Sobic003G191000--Sobic003G234101 Sobic003G191000--Sobic007G009600 Sobic009G161100 Sobic009G161100 Sobic003G191000--Sobic009G161100 Sobic008G123600 Sobic008G123600 Sobic003G191000--Sobic008G123600 Sobic003G110100 Sobic003G110100 Sobic003G191000--Sobic003G110100 Sobic005G200600 Sobic005G200600 Sobic003G191000--Sobic005G200600 Sobic006G161900--Sobic007G075700 Sobic006G161900--Sobic010G052300 Sobic001G376700 Sobic001G376700 Sobic006G161900--Sobic001G376700 Sobic006G161900--Sobic003G234101 Sobic006G161900--Sobic003G435100 Sobic004G193600 Sobic004G193600 Sobic006G161900--Sobic004G193600 Sobic006G161900--Sobic006G249400 Sobic004G296800 Sobic004G296800 Sobic006G161900--Sobic004G296800 Sobic006G161900--Sobic010G171300 Sobic003G371400 Sobic003G371400 Sobic001G343400--Sobic003G371400 Sobic001G343400--Sobic003G234101 Sobic004G290300 Sobic004G290300 Sobic001G343400--Sobic004G290300 Sobic001G140300 Sobic001G140300 Sobic001G343400--Sobic001G140300 Sobic005G112000 Sobic005G112000 Sobic001G343400--Sobic005G112000 Sobic005G145100 Sobic005G145100 Sobic001G343400--Sobic005G145100 Sobic001G388000 Sobic001G388000 Sobic001G343400--Sobic001G388000 Sobic002G041150 Sobic002G041150 Sobic001G343400--Sobic002G041150 Sobic008G055800 Sobic008G055800 Sobic001G343400--Sobic008G055800 Sobic010G052300--Sobic003G234101 Sobic010G052300--Sobic007G075700 Sobic010G052300--Sobic010G171300 Sobic004G052401 Sobic004G052401 Sobic010G052300--Sobic004G052401 Sobic010G052300--Sobic006G161900 Sobic009G073100 Sobic009G073100 Sobic010G052300--Sobic009G073100 Sobic010G052300--Sobic010G240500 Sobic009G200400 Sobic009G200400 Sobic010G052300--Sobic009G200400 Sobic010G052300--Sobic001G343400 Sobic004G044200 Sobic004G044200 Sobic006G249400--Sobic004G044200 Sobic006G249400--Sobic003G234101 Sobic006G249400--Sobic007G075700 Sobic005G218600 Sobic005G218600 Sobic006G249400--Sobic005G218600 Sobic004G309300 Sobic004G309300 Sobic006G249400--Sobic004G309300 Sobic006G256200 Sobic006G256200 Sobic006G249400--Sobic006G256200 Sobic005G218700 Sobic005G218700 Sobic006G249400--Sobic005G218700 Sobic006G033800 Sobic006G033800 Sobic006G249400--Sobic006G033800 Sobic001G012600 Sobic001G012600 Sobic006G249400--Sobic001G012600 Sobic010G171300--Sobic010G052300 Sobic010G171300--Sobic003G234101 Sobic010G171300--Sobic009G200400 Sobic010G171300--Sobic004G052401 Sobic010G171300--Sobic006G256200 Sobic010G171300--Sobic007G075700 Sobic010G171300--Sobic006G161900 Sobic010G171300--Sobic001G343400 Sobic005G004100 Sobic005G004100 Sobic010G171300--Sobic005G004100 Sobic003G058600 Sobic003G058600 Sobic001G170900--Sobic003G058600 Sobic001G170900--Sobic005G056201 Sobic001G003600 Sobic001G003600 Sobic001G170900--Sobic001G003600 Sobic001G170900--Sobic003G191000 Sobic006G172700 Sobic006G172700 Sobic001G170900--Sobic006G172700 Sobic001G170900--Sobic007G009600 Sobic001G394250 Sobic001G394250 Sobic001G170900--Sobic001G394250 Sobic005G110436 Sobic005G110436 Sobic001G170900--Sobic005G110436 Sobic001G127700 Sobic001G127700 Sobic001G170900--Sobic001G127700
Octagon: transcription factors


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