Gene annotation
Transcriptome id Sobic.006G161900.1
Synonym Sb06g023870
Functional annotation expressed protein
UniProt C5YCZ6
Pfam PF10033
Panther DB PTHR13430 PTHR13430:SF5
NCBI CDD KOG4573; Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy
KEGG Orthology K08331; autophagy-related protein 13
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49590 : Autophagy-related protein 13
RAP-DB (Rice) LOC_Os04g45570.1 : expressed protein
MaizeGDB (Corn) Zm00025a056610 , Zm00025a010411
Brachypodium KQK00533
Barley HORVU2Hr1G092230.1 , HORVU2Hr1G092230.2 , HORVU2Hr1G092230.3
Wheat TraesCS2D02G384600 , TraesCS2D02G384600 , TraesCS2B02G404900 , TraesCS2B02G404900 , TraesCS2A02G387200 , TraesCS2A02G387200
Populus -


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cDNA sequences
Sobic.006G161900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
2 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
3 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
4 Sobic.003G234101 - -
5 Sobic.003G435100 expressed protein -
6 Sobic.004G193600 - -
7 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
8 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
9 Sobic.010G171300 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
10 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
11 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
12 Sobic.001G334900 X8 domain containing protein, expressed -
13 Sobic.002G333100 transmembrane protein, putative, expressed -
14 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
16 Sobic.010G240700 PPR repeat containing protein, expressed -
17 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
18 Sobic.003G110100 cysteine synthase, mitochondrial precursor, putative, expressed K01738: cysteine synthase
19 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
20 Sobic.002G301200 OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed K16298: serine carboxypeptidase-like clade IV


Gene co-expression network
sample Sobic006G161900 Sobic006G161900 Sobic007G075700 Sobic007G075700 Sobic006G161900--Sobic007G075700 Sobic010G052300 Sobic010G052300 Sobic006G161900--Sobic010G052300 Sobic001G376700 Sobic001G376700 Sobic006G161900--Sobic001G376700 Sobic003G234101 Sobic003G234101 Sobic006G161900--Sobic003G234101 Sobic003G435100 Sobic003G435100 Sobic006G161900--Sobic003G435100 Sobic004G193600 Sobic004G193600 Sobic006G161900--Sobic004G193600 Sobic006G249400 Sobic006G249400 Sobic006G161900--Sobic006G249400 Sobic004G296800 Sobic004G296800 Sobic006G161900--Sobic004G296800 Sobic010G171300 Sobic010G171300 Sobic006G161900--Sobic010G171300 Sobic010G240700 Sobic010G240700 Sobic007G075700--Sobic010G240700 Sobic007G075700--Sobic003G234101 Sobic010G240600 Sobic010G240600 Sobic007G075700--Sobic010G240600 Sobic010G240500 Sobic010G240500 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic010G052300--Sobic003G234101 Sobic010G052300--Sobic007G075700 Sobic010G052300--Sobic010G171300 Sobic004G052401 Sobic004G052401 Sobic010G052300--Sobic004G052401 Sobic010G052300--Sobic006G161900 Sobic009G073100 Sobic009G073100 Sobic010G052300--Sobic009G073100 Sobic010G052300--Sobic010G240500 Sobic009G200400 Sobic009G200400 Sobic010G052300--Sobic009G200400 Sobic001G343400 Sobic001G343400 Sobic010G052300--Sobic001G343400 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic009G124000 Sobic009G124000 Sobic001G376700--Sobic009G124000 Sobic003G420900 Sobic003G420900 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic003G234101--Sobic007G075700 Sobic003G234101--Sobic010G052300 Sobic003G234101--Sobic010G240700 Sobic003G234101--Sobic001G343400 Sobic003G234101--Sobic010G171300 Sobic003G234101--Sobic010G240500 Sobic003G234101--Sobic003G435100 Sobic003G234101--Sobic006G249400 Sobic003G234101--Sobic010G240600 Sobic003G435100--Sobic007G075700 Sobic003G435100--Sobic003G234101 Sobic003G435100--Sobic003G191000 Sobic003G435100--Sobic006G161900 Sobic003G435100--Sobic001G343400 Sobic003G435100--Sobic010G052300 Sobic003G435100--Sobic006G249400 Sobic003G435100--Sobic010G171300 Sobic001G170900 Sobic001G170900 Sobic003G435100--Sobic001G170900 Sobic003G110100 Sobic003G110100 Sobic004G193600--Sobic003G110100 Sobic004G193600--Sobic009G124000 Sobic004G301200 Sobic004G301200 Sobic004G193600--Sobic004G301200 Sobic004G193600--Sobic006G161900 Sobic002G083200 Sobic002G083200 Sobic004G193600--Sobic002G083200 Sobic001G067300 Sobic001G067300 Sobic004G193600--Sobic001G067300 Sobic004G193600--Sobic010G052300 Sobic004G193600--Sobic009G073100 Sobic004G144400 Sobic004G144400 Sobic004G193600--Sobic004G144400 Sobic006G249400--Sobic004G044200 Sobic006G249400--Sobic003G234101 Sobic006G249400--Sobic007G075700 Sobic005G218600 Sobic005G218600 Sobic006G249400--Sobic005G218600 Sobic004G309300 Sobic004G309300 Sobic006G249400--Sobic004G309300 Sobic006G256200 Sobic006G256200 Sobic006G249400--Sobic006G256200 Sobic005G218700 Sobic005G218700 Sobic006G249400--Sobic005G218700 Sobic006G033800 Sobic006G033800 Sobic006G249400--Sobic006G033800 Sobic001G012600 Sobic001G012600 Sobic006G249400--Sobic001G012600 Sobic004G296800--Sobic001G376700 Sobic001G543700 Sobic001G543700 Sobic004G296800--Sobic001G543700 Sobic004G296800--Sobic004G044200 Sobic004G296800--Sobic003G420900 Sobic002G207900 Sobic002G207900 Sobic004G296800--Sobic002G207900 Sobic007G026200 Sobic007G026200 Sobic004G296800--Sobic007G026200 Sobic004G296800--Sobic008G123600 Sobic001G541300 Sobic001G541300 Sobic004G296800--Sobic001G541300 Sobic005G218201 Sobic005G218201 Sobic004G296800--Sobic005G218201 Sobic010G171300--Sobic010G052300 Sobic010G171300--Sobic003G234101 Sobic010G171300--Sobic009G200400 Sobic010G171300--Sobic004G052401 Sobic010G171300--Sobic006G256200 Sobic010G171300--Sobic007G075700 Sobic010G171300--Sobic006G161900 Sobic010G171300--Sobic001G343400 Sobic005G004100 Sobic005G004100 Sobic010G171300--Sobic005G004100
Octagon: transcription factors


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