Gene annotation
Transcriptome id Sobic.004G182500.1
Synonym GR1, GLYR1, GHBDH, Sb04g023180, ATGHBDH
Functional annotation NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed
UniProt C5XUZ3
Pfam PF03807 PF14833
Panther DB PTHR22981 PTHR22981:SF53
NCBI CDD KOG0409; Predicted dehydrogenase
KEGG Orthology K18121; glyoxylate/succinic semialdehyde reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25530 : glyoxylate reductase 1
RAP-DB (Rice) LOC_Os02g35500.1 : NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed
MaizeGDB (Corn) Zm00025a031646
Brachypodium KQJ99929
Barley HORVU6Hr1G029370.9 , HORVU6Hr1G029370.8 , HORVU6Hr1G029370.7 , HORVU6Hr1G029370.6 , HORVU6Hr1G029370.5 , HORVU6Hr1G029370.4 , HORVU6Hr1G029370.3 , HORVU6Hr1G029370.2 , HORVU6Hr1G029370.13 , HORVU6Hr1G029370.12 , HORVU6Hr1G029370.11 , HORVU6Hr1G029370.10
Wheat TraesCS6B02G176600 , TraesCS6B02G176600 , TraesCS6B02G176600 , TraesCS6D02G137700 , TraesCS6A02G148400
Populus -


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cDNA sequences
Sobic.004G182500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
2 Sobic.003G103400 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
3 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
4 Sobic.008G093200 expressed protein -
5 Sobic.010G258500 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed -
6 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
7 Sobic.006G281200 csAtPR5, putative, expressed -
8 Sobic.003G325500 ICE-like protease p20 domain containing protein, putative, expressed -
9 Sobic.001G215500 expressed protein -
10 Sobic.005G055000 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
11 Sobic.008G118600 riboflavin synthase alpha chain, putative, expressed K00793: ribE, riboflavin synthase
12 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
13 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
14 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
15 Sobic.003G015400 ribosomal protein S6 family protein, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
16 Sobic.006G002201 - -
17 Sobic.006G038200 receptor protein kinase, putative, expressed -
18 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
19 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
20 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic004G182500 Sobic004G182500 Sobic003G216500 Sobic003G216500 Sobic004G182500--Sobic003G216500 Sobic003G103400 Sobic003G103400 Sobic004G182500--Sobic003G103400 Sobic002G073800 Sobic002G073800 Sobic004G182500--Sobic002G073800 Sobic008G093200 Sobic008G093200 Sobic004G182500--Sobic008G093200 Sobic010G258500 Sobic010G258500 Sobic004G182500--Sobic010G258500 Sobic001G376700 Sobic001G376700 Sobic004G182500--Sobic001G376700 Sobic006G281200 Sobic006G281200 Sobic004G182500--Sobic006G281200 Sobic003G325500 Sobic003G325500 Sobic004G182500--Sobic003G325500 Sobic001G215500 Sobic001G215500 Sobic004G182500--Sobic001G215500 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic006G002201 Sobic006G002201 Sobic003G103400--Sobic006G002201 Sobic003G103400--Sobic008G093200 Sobic003G103400--Sobic003G216500 Sobic010G013900 Sobic010G013900 Sobic003G103400--Sobic010G013900 Sobic005G105500 Sobic005G105500 Sobic003G103400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic003G103400--Sobic003G028100 Sobic003G103400--Sobic004G182500 Sobic001G096100 Sobic001G096100 Sobic003G103400--Sobic001G096100 Sobic009G168000 Sobic009G168000 Sobic003G103400--Sobic009G168000 Sobic010G018400 Sobic010G018400 Sobic002G073800--Sobic010G018400 Sobic009G212200 Sobic009G212200 Sobic002G073800--Sobic009G212200 Sobic008G127500 Sobic008G127500 Sobic002G073800--Sobic008G127500 Sobic009G062000 Sobic009G062000 Sobic002G073800--Sobic009G062000 Sobic001G095632 Sobic001G095632 Sobic002G073800--Sobic001G095632 Sobic001G304400 Sobic001G304400 Sobic002G073800--Sobic001G304400 Sobic009G176000 Sobic009G176000 Sobic002G073800--Sobic009G176000 Sobic002G356400 Sobic002G356400 Sobic002G073800--Sobic002G356400 Sobic001G034700 Sobic001G034700 Sobic002G073800--Sobic001G034700 Sobic008G093200--Sobic005G105500 Sobic008G093200--Sobic001G096100 Sobic008G093200--Sobic003G103400 Sobic008G093200--Sobic003G028100 Sobic001G196100 Sobic001G196100 Sobic008G093200--Sobic001G196100 Sobic009G258600 Sobic009G258600 Sobic008G093200--Sobic009G258600 Sobic001G431700 Sobic001G431700 Sobic008G093200--Sobic001G431700 Sobic008G093200--Sobic006G002201 Sobic008G018000 Sobic008G018000 Sobic008G093200--Sobic008G018000 Sobic008G178800 Sobic008G178800 Sobic010G258500--Sobic008G178800 Sobic006G038200 Sobic006G038200 Sobic010G258500--Sobic006G038200 Sobic010G258500--Sobic003G216500 Sobic010G258500--Sobic004G182500 Sobic009G232200 Sobic009G232200 Sobic010G258500--Sobic009G232200 Sobic007G130800 Sobic007G130800 Sobic010G258500--Sobic007G130800 Sobic002G075500 Sobic002G075500 Sobic010G258500--Sobic002G075500 Sobic006G237200 Sobic006G237200 Sobic010G258500--Sobic006G237200 Sobic001G436100 Sobic001G436100 Sobic010G258500--Sobic001G436100 Sobic004G296800 Sobic004G296800 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic009G124000 Sobic009G124000 Sobic001G376700--Sobic009G124000 Sobic003G420900 Sobic003G420900 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic001G428100 Sobic001G428100 Sobic006G281200--Sobic001G428100 Sobic003G003000 Sobic003G003000 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic001G404100 Sobic001G404100 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400 Sobic001G428200 Sobic001G428200 Sobic003G325500--Sobic001G428200 Sobic003G325500--Sobic003G003000 Sobic006G206700 Sobic006G206700 Sobic003G325500--Sobic006G206700 Sobic001G087900 Sobic001G087900 Sobic003G325500--Sobic001G087900 Sobic004G028000 Sobic004G028000 Sobic003G325500--Sobic004G028000 Sobic003G417000 Sobic003G417000 Sobic003G325500--Sobic003G417000 Sobic003G369500 Sobic003G369500 Sobic003G325500--Sobic003G369500 Sobic005G055000 Sobic005G055000 Sobic003G325500--Sobic005G055000 Sobic003G325500--Sobic006G281200 Sobic009G207100 Sobic009G207100 Sobic001G215500--Sobic009G207100 Sobic004G006700 Sobic004G006700 Sobic001G215500--Sobic004G006700 Sobic001G215500--Sobic008G093200 Sobic010G224900 Sobic010G224900 Sobic001G215500--Sobic010G224900 Sobic001G215500--Sobic004G182500 Sobic004G027000 Sobic004G027000 Sobic001G215500--Sobic004G027000 Sobic001G202400 Sobic001G202400 Sobic001G215500--Sobic001G202400 Sobic004G225300 Sobic004G225300 Sobic001G215500--Sobic004G225300 Sobic006G195400 Sobic006G195400 Sobic001G215500--Sobic006G195400
Octagon: transcription factors


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