Gene annotation
Transcriptome id Sobic.003G103400.1
Synonym Sb03g008660, ROC1, ATRBX1, RBX1, HRT1
Functional annotation anaphase-promoting complex subunit 11, putative, expressed
UniProt C5XEZ9
Pfam PF12861
Panther DB PTHR11210 PTHR11210:SF22
NCBI CDD KOG2930; SCF ubiquitin ligase, Rbx1 component
KEGG Orthology K03868; RBX1, RING-box protein 1
Gene Ontology GO:0005680; anaphase-promoting complex GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G20570 : RING-box 1
RAP-DB (Rice) LOC_Os01g01700.1 : anaphase-promoting complex subunit 11, putative, expressed
MaizeGDB (Corn) Zm00025a032478 , Zm00025a023813 , Zm00025a035426
Brachypodium KQK02295 , KQK00961
Barley HORVU4Hr1G033730.1 , HORVU3Hr1G000400.4 , HORVU3Hr1G000400.1 , HORVU3Hr1G000400.3 , HORVU3Hr1G000400.2
Wheat TraesCSU02G056200 , TraesCS3A02G001800 , TraesCS3B02G000800 , TraesCS6A02G274400 , TraesCS6D02G254700
Populus -


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cDNA sequences
Sobic.003G103400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G002201 - -
2 Sobic.008G093200 expressed protein -
3 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
4 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.005G105500 expressed protein -
6 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
7 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
8 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
9 Sobic.009G168000 selT-like protein precursor, putative, expressed -
10 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
11 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
12 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
13 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
14 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
15 Sobic.002G406200 expressed protein -
16 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
17 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
18 Sobic.006G281200 csAtPR5, putative, expressed -
19 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
20 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19


Gene co-expression network
sample Sobic003G103400 Sobic003G103400 Sobic006G002201 Sobic006G002201 Sobic003G103400--Sobic006G002201 Sobic008G093200 Sobic008G093200 Sobic003G103400--Sobic008G093200 Sobic003G216500 Sobic003G216500 Sobic003G103400--Sobic003G216500 Sobic010G013900 Sobic010G013900 Sobic003G103400--Sobic010G013900 Sobic005G105500 Sobic005G105500 Sobic003G103400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic003G103400--Sobic003G028100 Sobic004G182500 Sobic004G182500 Sobic003G103400--Sobic004G182500 Sobic001G096100 Sobic001G096100 Sobic003G103400--Sobic001G096100 Sobic009G168000 Sobic009G168000 Sobic003G103400--Sobic009G168000 Sobic006G002201--Sobic003G103400 Sobic007G061400 Sobic007G061400 Sobic006G002201--Sobic007G061400 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic005G111900 Sobic005G111900 Sobic006G002201--Sobic005G111900 Sobic003G196800 Sobic003G196800 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic001G458700 Sobic001G458700 Sobic006G002201--Sobic001G458700 Sobic004G124100 Sobic004G124100 Sobic006G002201--Sobic004G124100 Sobic008G093200--Sobic005G105500 Sobic008G093200--Sobic001G096100 Sobic008G093200--Sobic003G103400 Sobic008G093200--Sobic003G028100 Sobic001G196100 Sobic001G196100 Sobic008G093200--Sobic001G196100 Sobic009G258600 Sobic009G258600 Sobic008G093200--Sobic009G258600 Sobic001G431700 Sobic001G431700 Sobic008G093200--Sobic001G431700 Sobic008G093200--Sobic006G002201 Sobic008G018000 Sobic008G018000 Sobic008G093200--Sobic008G018000 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic001G025600 Sobic001G025600 Sobic010G013900--Sobic001G025600 Sobic002G371100 Sobic002G371100 Sobic010G013900--Sobic002G371100 Sobic005G027300 Sobic005G027300 Sobic010G013900--Sobic005G027300 Sobic001G481700 Sobic001G481700 Sobic010G013900--Sobic001G481700 Sobic004G248900 Sobic004G248900 Sobic010G013900--Sobic004G248900 Sobic004G002350 Sobic004G002350 Sobic010G013900--Sobic004G002350 Sobic010G013900--Sobic003G196800 Sobic001G117400 Sobic001G117400 Sobic010G013900--Sobic001G117400 Sobic010G013900--Sobic003G028100 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic002G341800 Sobic002G341800 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic005G105500--Sobic007G176200 Sobic003G330500 Sobic003G330500 Sobic005G105500--Sobic003G330500 Sobic005G105500--Sobic006G002201 Sobic009G212300 Sobic009G212300 Sobic003G028100--Sobic009G212300 Sobic009G234400 Sobic009G234400 Sobic003G028100--Sobic009G234400 Sobic003G028100--Sobic001G096100 Sobic003G028100--Sobic003G196800 Sobic006G079900 Sobic006G079900 Sobic003G028100--Sobic006G079900 Sobic007G217400 Sobic007G217400 Sobic003G028100--Sobic007G217400 Sobic003G028100--Sobic010G013900 Sobic002G331300 Sobic002G331300 Sobic003G028100--Sobic002G331300 Sobic001G404100 Sobic001G404100 Sobic003G028100--Sobic001G404100 Sobic004G182500--Sobic003G216500 Sobic004G182500--Sobic003G103400 Sobic004G182500--Sobic002G073800 Sobic004G182500--Sobic008G093200 Sobic010G258500 Sobic010G258500 Sobic004G182500--Sobic010G258500 Sobic001G376700 Sobic001G376700 Sobic004G182500--Sobic001G376700 Sobic006G281200 Sobic006G281200 Sobic004G182500--Sobic006G281200 Sobic003G325500 Sobic003G325500 Sobic004G182500--Sobic003G325500 Sobic001G215500 Sobic001G215500 Sobic004G182500--Sobic001G215500 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic002G078400 Sobic002G078400 Sobic009G168000--Sobic002G078400 Sobic007G091000 Sobic007G091000 Sobic009G168000--Sobic007G091000 Sobic010G065400 Sobic010G065400 Sobic009G168000--Sobic010G065400 Sobic006G109700 Sobic006G109700 Sobic009G168000--Sobic006G109700 Sobic008G127500 Sobic008G127500 Sobic009G168000--Sobic008G127500 Sobic003G305100 Sobic003G305100 Sobic009G168000--Sobic003G305100 Sobic009G168000--Sobic010G038700 Sobic001G502200 Sobic001G502200 Sobic009G168000--Sobic001G502200 Sobic003G277000 Sobic003G277000 Sobic009G168000--Sobic003G277000
Octagon: transcription factors


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