Gene annotation
Transcriptome id Sobic.002G406200.1
Synonym Sb02g042020
Functional annotation expressed protein
UniProt C5X4T1
Pfam -
Panther DB PTHR38377
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57320 : -
RAP-DB (Rice) LOC_Os07g46710.2 : expressed protein
MaizeGDB (Corn) Zm00025a033321 , Zm00025a049051
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G406200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G055500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
3 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
4 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
5 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
6 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
7 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
8 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
9 Sobic.001G331900 expressed protein -
10 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
11 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
12 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
13 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
14 Sobic.007G100425 - -
15 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
16 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
17 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
18 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
19 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
20 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A


Gene co-expression network
sample Sobic002G406200 Sobic002G406200 Sobic003G055500 Sobic003G055500 Sobic002G406200--Sobic003G055500 Sobic001G005900 Sobic001G005900 Sobic002G406200--Sobic001G005900 Sobic008G058300 Sobic008G058300 Sobic002G406200--Sobic008G058300 Sobic004G216800 Sobic004G216800 Sobic002G406200--Sobic004G216800 Sobic003G124800 Sobic003G124800 Sobic002G406200--Sobic003G124800 Sobic009G050200 Sobic009G050200 Sobic002G406200--Sobic009G050200 Sobic001G502200 Sobic001G502200 Sobic002G406200--Sobic001G502200 Sobic008G073300 Sobic008G073300 Sobic002G406200--Sobic008G073300 Sobic001G331900 Sobic001G331900 Sobic002G406200--Sobic001G331900 Sobic001G529000 Sobic001G529000 Sobic003G055500--Sobic001G529000 Sobic005G157200 Sobic005G157200 Sobic003G055500--Sobic005G157200 Sobic003G055500--Sobic008G058300 Sobic005G111100 Sobic005G111100 Sobic003G055500--Sobic005G111100 Sobic010G267900 Sobic010G267900 Sobic003G055500--Sobic010G267900 Sobic003G055500--Sobic002G406200 Sobic006G150600 Sobic006G150600 Sobic003G055500--Sobic006G150600 Sobic010G065400 Sobic010G065400 Sobic003G055500--Sobic010G065400 Sobic002G406500 Sobic002G406500 Sobic003G055500--Sobic002G406500 Sobic009G198500 Sobic009G198500 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic004G300900 Sobic004G300900 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic002G078400 Sobic002G078400 Sobic001G005900--Sobic002G078400 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic008G058300--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic008G058300--Sobic003G025200 Sobic008G058300--Sobic001G331900 Sobic006G052400 Sobic006G052400 Sobic008G058300--Sobic006G052400 Sobic008G058300--Sobic004G300900 Sobic010G029400 Sobic010G029400 Sobic008G058300--Sobic010G029400 Sobic004G002350 Sobic004G002350 Sobic008G058300--Sobic004G002350 Sobic008G058300--Sobic002G078400 Sobic001G377800 Sobic001G377800 Sobic008G058300--Sobic001G377800 Sobic009G227400 Sobic009G227400 Sobic004G216800--Sobic009G227400 Sobic002G255100 Sobic002G255100 Sobic004G216800--Sobic002G255100 Sobic001G085400 Sobic001G085400 Sobic004G216800--Sobic001G085400 Sobic004G138800 Sobic004G138800 Sobic004G216800--Sobic004G138800 Sobic009G144300 Sobic009G144300 Sobic004G216800--Sobic009G144300 Sobic001G444800 Sobic001G444800 Sobic004G216800--Sobic001G444800 Sobic008G132400 Sobic008G132400 Sobic004G216800--Sobic008G132400 Sobic007G100425 Sobic007G100425 Sobic004G216800--Sobic007G100425 Sobic001G018800 Sobic001G018800 Sobic004G216800--Sobic001G018800 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic003G018600 Sobic003G018600 Sobic009G050200--Sobic003G018600 Sobic009G050200--Sobic006G052400 Sobic009G050200--Sobic008G058300 Sobic009G050200--Sobic001G331900 Sobic009G050200--Sobic005G157200 Sobic009G050200--Sobic001G018800 Sobic009G050200--Sobic001G377800 Sobic001G340500 Sobic001G340500 Sobic009G050200--Sobic001G340500 Sobic009G050200--Sobic004G002350 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic008G073300--Sobic004G066800 Sobic008G073300--Sobic007G045600 Sobic002G371100 Sobic002G371100 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic001G025600 Sobic001G025600 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic004G107600 Sobic004G107600 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic001G331900--Sobic008G058300 Sobic001G331900--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic001G331900--Sobic008G132800 Sobic001G331900--Sobic004G300900 Sobic001G331900--Sobic001G377800 Sobic003G362400 Sobic003G362400 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000
Octagon: transcription factors


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