Gene annotation
Transcriptome id Sobic.001G334900.1
Synonym PDCB4, Sb01g032330
Functional annotation X8 domain containing protein, expressed
UniProt C5WWI8
Pfam PF07983
Panther DB PTHR32227 PTHR32227:SF67
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18650 : plasmodesmata callose-binding protein 3
RAP-DB (Rice) LOC_Os03g30830.1 : X8 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002887 , Zm00025a052192
Brachypodium KQK14439 , KQK14438
Barley HORVU6Hr1G019780.1 , HORVU6Hr1G019780.4 , HORVU6Hr1G019780.7 , HORVU6Hr1G019780.9 , HORVU6Hr1G019780.3 , HORVU6Hr1G019780.2 , HORVU6Hr1G019780.5 , HORVU6Hr1G019780.8
Wheat TraesCS6B02G138700 , TraesCS6A02G110400 , TraesCS6D02G099100
Populus -


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cDNA sequences
Sobic.001G334900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
2 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.010G228100 "DEP3(Ortholog in rice:Qiao et al., 2011)"(PubMedID : 31659937)@PLA IIIA/PLP7, putative, expressed -
4 Sobic.001G208600 receptor kinase like protein, putative, expressed -
5 Sobic.009G033400 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
7 Sobic.007G050600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF6 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
8 Sobic.001G012200 similar to Cytochrome P450 71E1(PubMedID : 24655390)@4-hydroxyphenylacetaldehyde oxime monooxygenase(PubMedID : 27964718)@cytochrome P450, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
9 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
10 Sobic.001G345900 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.009G125900 expressed protein -
12 Sobic.003G099166 - -
13 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.001G012300 "similar to Cytochrome P450 79A1, up-regulated under drought stress "(PubMedID : 24655390)@similar to Cytochrome P450 79A1(PubMedID : 24655390)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@Tyrosine N-monooxygenase(PubMedID : 27964718)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 21880107)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 26361733)@cytochrome P450, putative, expressed K13027: tyrosine N-monooxygenase
15 Sobic.002G072200 expressed protein -
16 Sobic.010G096100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
17 Sobic.001G012400 "UDP-glucose glucosyltransferase, up-regulated under drought stress "(PubMedID : 24655390)@p-hydroxymandelonitrile-O-glucosyltransferase(PubMedID : 10585420)@-(PubMedID : 27964718)@UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase. in vitro substrate regiospecificity(PubMedID : 12946413)@"Cyanohydrin beta-glucosyltransferase, similar to UDP-glucose glucosyltransferase, dhurrin biosynthesis"(PubMedID : 10585420)@cytokinin-O-glucosyltransferase 2, putative, expressed K13030: cyanohydrin beta-glucosyltransferase
18 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase


Gene co-expression network
sample Sobic001G334900 Sobic001G334900 Sobic009G232200 Sobic009G232200 Sobic001G334900--Sobic009G232200 Sobic001G012600 Sobic001G012600 Sobic001G334900--Sobic001G012600 Sobic010G228100 Sobic010G228100 Sobic001G334900--Sobic010G228100 Sobic001G208600 Sobic001G208600 Sobic001G334900--Sobic001G208600 Sobic009G033400 Sobic009G033400 Sobic001G334900--Sobic009G033400 Sobic002G347300 Sobic002G347300 Sobic001G334900--Sobic002G347300 Sobic007G050600 Sobic007G050600 Sobic001G334900--Sobic007G050600 Sobic001G012200 Sobic001G012200 Sobic001G334900--Sobic001G012200 Sobic009G063400 Sobic009G063400 Sobic001G334900--Sobic009G063400 Sobic009G232200--Sobic001G334900 Sobic009G232200--Sobic002G347300 Sobic002G338400 Sobic002G338400 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic006G075000 Sobic006G075000 Sobic009G232200--Sobic006G075000 Sobic004G168700 Sobic004G168700 Sobic009G232200--Sobic004G168700 Sobic002G072200 Sobic002G072200 Sobic009G232200--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic001G012600--Sobic001G012200 Sobic001G012600--Sobic001G334900 Sobic001G012300 Sobic001G012300 Sobic001G012600--Sobic001G012300 Sobic001G012600--Sobic002G347300 Sobic001G012400 Sobic001G012400 Sobic001G012600--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic001G012600--Sobic001G012500 Sobic001G012600--Sobic009G232200 Sobic001G345900 Sobic001G345900 Sobic001G012600--Sobic001G345900 Sobic004G257700 Sobic004G257700 Sobic001G012600--Sobic004G257700 Sobic010G228100--Sobic001G334900 Sobic003G006100 Sobic003G006100 Sobic010G228100--Sobic003G006100 Sobic001G037400 Sobic001G037400 Sobic010G228100--Sobic001G037400 Sobic010G228100--Sobic009G232200 Sobic004G243800 Sobic004G243800 Sobic010G228100--Sobic004G243800 Sobic010G228100--Sobic009G033400 Sobic010G228100--Sobic004G168700 Sobic003G031400 Sobic003G031400 Sobic010G228100--Sobic003G031400 Sobic010G096100 Sobic010G096100 Sobic010G228100--Sobic010G096100 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic003G099166 Sobic003G099166 Sobic001G208600--Sobic003G099166 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic003G352700 Sobic003G352700 Sobic001G208600--Sobic003G352700 Sobic009G033400--Sobic001G334900 Sobic003G443200 Sobic003G443200 Sobic009G033400--Sobic003G443200 Sobic009G253300 Sobic009G253300 Sobic009G033400--Sobic009G253300 Sobic009G033400--Sobic010G228100 Sobic009G033400--Sobic001G345900 Sobic009G033400--Sobic001G012200 Sobic009G033400--Sobic002G347300 Sobic009G033400--Sobic001G012400 Sobic009G033400--Sobic001G012300 Sobic002G347300--Sobic001G012400 Sobic002G347300--Sobic001G012600 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic009G221900 Sobic009G221900 Sobic002G347300--Sobic009G221900 Sobic002G347300--Sobic003G099166 Sobic002G347300--Sobic002G053900 Sobic002G347300--Sobic002G338400 Sobic001G460000 Sobic001G460000 Sobic007G050600--Sobic001G460000 Sobic007G050600--Sobic001G334900 Sobic004G295700 Sobic004G295700 Sobic007G050600--Sobic004G295700 Sobic007G050600--Sobic009G063400 Sobic004G296200 Sobic004G296200 Sobic007G050600--Sobic004G296200 Sobic007G050600--Sobic009G232200 Sobic007G050600--Sobic001G012600 Sobic007G050600--Sobic004G257700 Sobic007G050600--Sobic010G228100 Sobic001G012200--Sobic001G012300 Sobic001G012200--Sobic001G012600 Sobic001G012200--Sobic001G334900 Sobic001G012200--Sobic001G012400 Sobic010G225001 Sobic010G225001 Sobic001G012200--Sobic010G225001 Sobic007G181000 Sobic007G181000 Sobic001G012200--Sobic007G181000 Sobic001G012200--Sobic004G257700 Sobic001G255300 Sobic001G255300 Sobic001G012200--Sobic001G255300 Sobic001G012200--Sobic001G345900 Sobic009G125900 Sobic009G125900 Sobic009G063400--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic009G063400--Sobic002G075500 Sobic009G026101 Sobic009G026101 Sobic009G063400--Sobic009G026101 Sobic002G118700 Sobic002G118700 Sobic009G063400--Sobic002G118700 Sobic009G063400--Sobic010G096100 Sobic009G063400--Sobic001G334900 Sobic010G090500 Sobic010G090500 Sobic009G063400--Sobic010G090500 Sobic009G063400--Sobic001G208600 Sobic009G063400--Sobic006G075000
Octagon: transcription factors


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