Gene annotation
Transcriptome id Sobic.001G345900.1
Synonym Sb01g033170
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5S960
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF142
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G10380 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g28040.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052144
Brachypodium PNT77275
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G334900 X8 domain containing protein, expressed -
2 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
3 Sobic.001G012200 similar to Cytochrome P450 71E1(PubMedID : 24655390)@4-hydroxyphenylacetaldehyde oxime monooxygenase(PubMedID : 27964718)@cytochrome P450, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
4 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
5 Sobic.002G072200 expressed protein -
6 Sobic.004G257700 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
7 Sobic.004G328601 - K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
8 Sobic.009G033400 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.001G012300 "similar to Cytochrome P450 79A1, up-regulated under drought stress "(PubMedID : 24655390)@similar to Cytochrome P450 79A1(PubMedID : 24655390)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@Tyrosine N-monooxygenase(PubMedID : 27964718)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 21880107)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 26361733)@cytochrome P450, putative, expressed K13027: tyrosine N-monooxygenase
10 Sobic.007G190200 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
11 Sobic.007G181000 serpin domain containing protein, putative, expressed K13963: serpin B
12 Sobic.010G225001 - -
13 Sobic.010G228100 "DEP3(Ortholog in rice:Qiao et al., 2011)"(PubMedID : 31659937)@PLA IIIA/PLP7, putative, expressed -
14 Sobic.008G164900 membrane associated DUF588 domain containing protein, putative, expressed -
15 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
16 Sobic.007G009600 expressed protein -
17 Sobic.004G328900 expressed protein -
18 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -


Gene co-expression network
sample Sobic001G345900 Sobic001G345900 Sobic001G334900 Sobic001G334900 Sobic001G345900--Sobic001G334900 Sobic002G347300 Sobic002G347300 Sobic001G345900--Sobic002G347300 Sobic001G012200 Sobic001G012200 Sobic001G345900--Sobic001G012200 Sobic001G012600 Sobic001G012600 Sobic001G345900--Sobic001G012600 Sobic002G072200 Sobic002G072200 Sobic001G345900--Sobic002G072200 Sobic004G257700 Sobic004G257700 Sobic001G345900--Sobic004G257700 Sobic004G328601 Sobic004G328601 Sobic001G345900--Sobic004G328601 Sobic009G033400 Sobic009G033400 Sobic001G345900--Sobic009G033400 Sobic001G012300 Sobic001G012300 Sobic001G345900--Sobic001G012300 Sobic009G232200 Sobic009G232200 Sobic001G334900--Sobic009G232200 Sobic001G334900--Sobic001G012600 Sobic010G228100 Sobic010G228100 Sobic001G334900--Sobic010G228100 Sobic001G208600 Sobic001G208600 Sobic001G334900--Sobic001G208600 Sobic001G334900--Sobic009G033400 Sobic001G334900--Sobic002G347300 Sobic007G050600 Sobic007G050600 Sobic001G334900--Sobic007G050600 Sobic001G334900--Sobic001G012200 Sobic009G063400 Sobic009G063400 Sobic001G334900--Sobic009G063400 Sobic001G012400 Sobic001G012400 Sobic002G347300--Sobic001G012400 Sobic002G347300--Sobic001G012600 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic009G221900 Sobic009G221900 Sobic002G347300--Sobic009G221900 Sobic003G099166 Sobic003G099166 Sobic002G347300--Sobic003G099166 Sobic002G053900 Sobic002G053900 Sobic002G347300--Sobic002G053900 Sobic002G338400 Sobic002G338400 Sobic002G347300--Sobic002G338400 Sobic001G012200--Sobic001G012300 Sobic001G012200--Sobic001G012600 Sobic001G012200--Sobic001G334900 Sobic001G012200--Sobic001G012400 Sobic010G225001 Sobic010G225001 Sobic001G012200--Sobic010G225001 Sobic007G181000 Sobic007G181000 Sobic001G012200--Sobic007G181000 Sobic001G012200--Sobic004G257700 Sobic001G255300 Sobic001G255300 Sobic001G012200--Sobic001G255300 Sobic001G012200--Sobic001G345900 Sobic001G012600--Sobic001G012200 Sobic001G012600--Sobic001G334900 Sobic001G012600--Sobic001G012300 Sobic001G012600--Sobic002G347300 Sobic001G012600--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic001G012600--Sobic001G012500 Sobic001G012600--Sobic009G232200 Sobic001G012600--Sobic001G345900 Sobic001G012600--Sobic004G257700 Sobic009G032600 Sobic009G032600 Sobic002G072200--Sobic009G032600 Sobic006G075000 Sobic006G075000 Sobic002G072200--Sobic006G075000 Sobic003G062000 Sobic003G062000 Sobic002G072200--Sobic003G062000 Sobic009G226900 Sobic009G226900 Sobic002G072200--Sobic009G226900 Sobic002G072200--Sobic009G232200 Sobic006G036400 Sobic006G036400 Sobic002G072200--Sobic006G036400 Sobic010G086800 Sobic010G086800 Sobic002G072200--Sobic010G086800 Sobic002G072200--Sobic001G208600 Sobic002G072200--Sobic003G099166 Sobic005G190800 Sobic005G190800 Sobic004G257700--Sobic005G190800 Sobic002G128600 Sobic002G128600 Sobic004G257700--Sobic002G128600 Sobic001G472000 Sobic001G472000 Sobic004G257700--Sobic001G472000 Sobic008G189500 Sobic008G189500 Sobic004G257700--Sobic008G189500 Sobic001G068600 Sobic001G068600 Sobic004G257700--Sobic001G068600 Sobic005G029400 Sobic005G029400 Sobic004G257700--Sobic005G029400 Sobic005G218201 Sobic005G218201 Sobic004G257700--Sobic005G218201 Sobic005G218600 Sobic005G218600 Sobic004G257700--Sobic005G218600 Sobic004G257700--Sobic001G255300 Sobic004G328900 Sobic004G328900 Sobic004G328601--Sobic004G328900 Sobic001G502500 Sobic001G502500 Sobic004G328601--Sobic001G502500 Sobic004G328601--Sobic001G345900 Sobic004G328601--Sobic007G181000 Sobic001G379300 Sobic001G379300 Sobic004G328601--Sobic001G379300 Sobic004G328601--Sobic001G255300 Sobic003G317800 Sobic003G317800 Sobic004G328601--Sobic003G317800 Sobic006G238100 Sobic006G238100 Sobic004G328601--Sobic006G238100 Sobic004G328601--Sobic002G128600 Sobic009G033400--Sobic001G334900 Sobic003G443200 Sobic003G443200 Sobic009G033400--Sobic003G443200 Sobic009G253300 Sobic009G253300 Sobic009G033400--Sobic009G253300 Sobic009G033400--Sobic010G228100 Sobic009G033400--Sobic001G345900 Sobic009G033400--Sobic001G012200 Sobic009G033400--Sobic002G347300 Sobic009G033400--Sobic001G012400 Sobic009G033400--Sobic001G012300 Sobic001G012300--Sobic001G012200 Sobic001G012300--Sobic001G012600 Sobic005G165400 Sobic005G165400 Sobic001G012300--Sobic005G165400 Sobic001G012300--Sobic001G334900 Sobic001G012300--Sobic007G181000 Sobic001G012300--Sobic001G012400 Sobic003G068300 Sobic003G068300 Sobic001G012300--Sobic003G068300 Sobic005G218700 Sobic005G218700 Sobic001G012300--Sobic005G218700 Sobic001G012300--Sobic001G255300
Octagon: transcription factors


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