Gene annotation
Transcriptome id Sobic.004G085500.1
Synonym
Functional annotation OsFBK3 - F-box domain and kelch repeat containing protein, expressed
UniProt A0A194YNE2
Pfam PF00646 PF01344
Panther DB PTHR24412 PTHR24412:SF190
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G55270 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os02g10850.1 : OsFBK3 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a019516
Brachypodium -
Barley HORVU6Hr1G037850.3 , HORVU6Hr1G037850.2 , HORVU6Hr1G037850.4
Wheat TraesCS6D02G167900 , TraesCS6A02G175700 , TraesCS6B02G209700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
2 Sobic.009G225800 expressed protein -
3 Sobic.010G001300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein transferase (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
4 Sobic.009G084400 transporter family protein, putative, expressed -
5 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
6 Sobic.005G093500 expressed protein -
7 Sobic.004G187600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
8 Sobic.009G106500 PMR5, putative, expressed -
9 Sobic.004G008600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
10 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.010G269000 bZIP transcription factor domain containing protein, expressed -
13 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
14 Sobic.005G079100 dirigent, putative -
15 Sobic.004G119900 expansin precursor, putative, expressed -
16 Sobic.006G059800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.003G046700 expressed protein -
18 Sobic.010G128300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
20 Sobic.008G079800 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase


Gene co-expression network
sample Sobic004G085500 Sobic004G085500 Sobic006G101900 Sobic006G101900 Sobic004G085500--Sobic006G101900 Sobic009G225800 Sobic009G225800 Sobic004G085500--Sobic009G225800 Sobic010G001300 Sobic010G001300 Sobic004G085500--Sobic010G001300 Sobic009G084400 Sobic009G084400 Sobic004G085500--Sobic009G084400 Sobic005G134200 Sobic005G134200 Sobic004G085500--Sobic005G134200 Sobic005G093500 Sobic005G093500 Sobic004G085500--Sobic005G093500 Sobic004G187600 Sobic004G187600 Sobic004G085500--Sobic004G187600 Sobic009G106500 Sobic009G106500 Sobic004G085500--Sobic009G106500 Sobic004G008600 Sobic004G008600 Sobic004G085500--Sobic004G008600 Sobic001G414800 Sobic001G414800 Sobic006G101900--Sobic001G414800 Sobic005G097400 Sobic005G097400 Sobic006G101900--Sobic005G097400 Sobic001G499900 Sobic001G499900 Sobic006G101900--Sobic001G499900 Sobic006G133300 Sobic006G133300 Sobic006G101900--Sobic006G133300 Sobic006G101900--Sobic009G225800 Sobic010G191600 Sobic010G191600 Sobic006G101900--Sobic010G191600 Sobic001G507100 Sobic001G507100 Sobic006G101900--Sobic001G507100 Sobic008G022100 Sobic008G022100 Sobic006G101900--Sobic008G022100 Sobic003G167300 Sobic003G167300 Sobic006G101900--Sobic003G167300 Sobic006G047200 Sobic006G047200 Sobic009G225800--Sobic006G047200 Sobic002G392000 Sobic002G392000 Sobic009G225800--Sobic002G392000 Sobic006G171100 Sobic006G171100 Sobic009G225800--Sobic006G171100 Sobic010G241900 Sobic010G241900 Sobic009G225800--Sobic010G241900 Sobic009G136800 Sobic009G136800 Sobic009G225800--Sobic009G136800 Sobic005G035900 Sobic005G035900 Sobic009G225800--Sobic005G035900 Sobic002G391300 Sobic002G391300 Sobic009G225800--Sobic002G391300 Sobic005G046400 Sobic005G046400 Sobic009G225800--Sobic005G046400 Sobic009G225800--Sobic001G499900 Sobic001G218500 Sobic001G218500 Sobic010G001300--Sobic001G218500 Sobic004G014600 Sobic004G014600 Sobic010G001300--Sobic004G014600 Sobic007G135100 Sobic007G135100 Sobic010G001300--Sobic007G135100 Sobic004G119800 Sobic004G119800 Sobic010G001300--Sobic004G119800 Sobic002G195600 Sobic002G195600 Sobic010G001300--Sobic002G195600 Sobic006G196400 Sobic006G196400 Sobic010G001300--Sobic006G196400 Sobic006G092700 Sobic006G092700 Sobic010G001300--Sobic006G092700 Sobic010G097200 Sobic010G097200 Sobic010G001300--Sobic010G097200 Sobic001G209300 Sobic001G209300 Sobic010G001300--Sobic001G209300 Sobic002G197000 Sobic002G197000 Sobic009G084400--Sobic002G197000 Sobic002G029500 Sobic002G029500 Sobic009G084400--Sobic002G029500 Sobic010G213600 Sobic010G213600 Sobic009G084400--Sobic010G213600 Sobic002G274600 Sobic002G274600 Sobic009G084400--Sobic002G274600 Sobic009G084400--Sobic002G391300 Sobic009G084400--Sobic005G134200 Sobic005G226400 Sobic005G226400 Sobic009G084400--Sobic005G226400 Sobic006G092100 Sobic006G092100 Sobic009G084400--Sobic006G092100 Sobic009G084400--Sobic006G171100 Sobic010G269000 Sobic010G269000 Sobic005G134200--Sobic010G269000 Sobic005G134200--Sobic004G008600 Sobic005G134200--Sobic005G226400 Sobic005G134200--Sobic002G391300 Sobic010G191700 Sobic010G191700 Sobic005G134200--Sobic010G191700 Sobic005G134200--Sobic010G241900 Sobic010G128300 Sobic010G128300 Sobic005G134200--Sobic010G128300 Sobic007G220400 Sobic007G220400 Sobic005G134200--Sobic007G220400 Sobic005G134200--Sobic006G047200 Sobic002G041150 Sobic002G041150 Sobic005G093500--Sobic002G041150 Sobic005G071800 Sobic005G071800 Sobic005G093500--Sobic005G071800 Sobic003G371400 Sobic003G371400 Sobic005G093500--Sobic003G371400 Sobic005G093500--Sobic004G085500 Sobic005G012800 Sobic005G012800 Sobic005G093500--Sobic005G012800 Sobic007G064900 Sobic007G064900 Sobic005G093500--Sobic007G064900 Sobic006G256200 Sobic006G256200 Sobic005G093500--Sobic006G256200 Sobic004G052401 Sobic004G052401 Sobic005G093500--Sobic004G052401 Sobic002G083600 Sobic002G083600 Sobic005G093500--Sobic002G083600 Sobic004G187600--Sobic009G225800 Sobic005G212800 Sobic005G212800 Sobic004G187600--Sobic005G212800 Sobic004G187600--Sobic009G136800 Sobic001G234100 Sobic001G234100 Sobic004G187600--Sobic001G234100 Sobic005G101000 Sobic005G101000 Sobic004G187600--Sobic005G101000 Sobic004G299500 Sobic004G299500 Sobic004G187600--Sobic004G299500 Sobic005G219500 Sobic005G219500 Sobic004G187600--Sobic005G219500 Sobic001G395900 Sobic001G395900 Sobic004G187600--Sobic001G395900 Sobic006G230100 Sobic006G230100 Sobic004G187600--Sobic006G230100 Sobic002G289500 Sobic002G289500 Sobic009G106500--Sobic002G289500 Sobic003G255600 Sobic003G255600 Sobic009G106500--Sobic003G255600 Sobic009G106500--Sobic006G047200 Sobic008G058600 Sobic008G058600 Sobic009G106500--Sobic008G058600 Sobic002G082000 Sobic002G082000 Sobic009G106500--Sobic002G082000 Sobic009G106500--Sobic006G230100 Sobic009G106500--Sobic006G171100 Sobic001G153100 Sobic001G153100 Sobic009G106500--Sobic001G153100 Sobic009G106500--Sobic002G029500 Sobic004G008600--Sobic010G269000 Sobic004G008600--Sobic005G134200 Sobic005G216500 Sobic005G216500 Sobic004G008600--Sobic005G216500 Sobic003G046700 Sobic003G046700 Sobic004G008600--Sobic003G046700 Sobic005G226350 Sobic005G226350 Sobic004G008600--Sobic005G226350 Sobic005G120900 Sobic005G120900 Sobic004G008600--Sobic005G120900 Sobic004G008600--Sobic007G220400 Sobic004G008600--Sobic005G226400 Sobic004G008600--Sobic010G191700
Octagon: transcription factors


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