Gene annotation
Transcriptome id Sobic.004G187600.1
Synonym Sb04g023600
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XVL9
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g36300.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT61196
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G225800 expressed protein -
2 Sobic.005G212800 carboxyl-terminal peptidase, putative, expressed -
3 Sobic.009G136800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
4 Sobic.001G234100 expressed protein -
5 Sobic.005G101000 - -
6 Sobic.004G299500 - -
7 Sobic.005G219500 cytochrome P450, putative, expressed -
8 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
9 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
10 Sobic.006G229901 - -
11 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
12 Sobic.008G058600 protein kinase family protein, putative, expressed -
13 Sobic.009G165100 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.001G272800 NBS-LRR disease resistance protein, putative, expressed -
15 Sobic.003G045650 - -
16 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
18 Sobic.005G226400 RGH1A, putative, expressed -
19 Sobic.007G202480 - -
20 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic004G187600 Sobic004G187600 Sobic009G225800 Sobic009G225800 Sobic004G187600--Sobic009G225800 Sobic005G212800 Sobic005G212800 Sobic004G187600--Sobic005G212800 Sobic009G136800 Sobic009G136800 Sobic004G187600--Sobic009G136800 Sobic001G234100 Sobic001G234100 Sobic004G187600--Sobic001G234100 Sobic005G101000 Sobic005G101000 Sobic004G187600--Sobic005G101000 Sobic004G299500 Sobic004G299500 Sobic004G187600--Sobic004G299500 Sobic005G219500 Sobic005G219500 Sobic004G187600--Sobic005G219500 Sobic001G395900 Sobic001G395900 Sobic004G187600--Sobic001G395900 Sobic006G230100 Sobic006G230100 Sobic004G187600--Sobic006G230100 Sobic006G047200 Sobic006G047200 Sobic009G225800--Sobic006G047200 Sobic002G392000 Sobic002G392000 Sobic009G225800--Sobic002G392000 Sobic006G171100 Sobic006G171100 Sobic009G225800--Sobic006G171100 Sobic010G241900 Sobic010G241900 Sobic009G225800--Sobic010G241900 Sobic009G225800--Sobic009G136800 Sobic005G035900 Sobic005G035900 Sobic009G225800--Sobic005G035900 Sobic002G391300 Sobic002G391300 Sobic009G225800--Sobic002G391300 Sobic005G046400 Sobic005G046400 Sobic009G225800--Sobic005G046400 Sobic001G499900 Sobic001G499900 Sobic009G225800--Sobic001G499900 Sobic005G212800--Sobic001G234100 Sobic008G084800 Sobic008G084800 Sobic005G212800--Sobic008G084800 Sobic005G212800--Sobic005G101000 Sobic005G205400 Sobic005G205400 Sobic005G212800--Sobic005G205400 Sobic003G045650 Sobic003G045650 Sobic005G212800--Sobic003G045650 Sobic005G212800--Sobic006G047200 Sobic008G058600 Sobic008G058600 Sobic005G212800--Sobic008G058600 Sobic007G097550 Sobic007G097550 Sobic005G212800--Sobic007G097550 Sobic005G212800--Sobic001G395900 Sobic009G136800--Sobic006G171100 Sobic009G136800--Sobic002G391300 Sobic005G226400 Sobic005G226400 Sobic009G136800--Sobic005G226400 Sobic010G010000 Sobic010G010000 Sobic009G136800--Sobic010G010000 Sobic002G063700 Sobic002G063700 Sobic009G136800--Sobic002G063700 Sobic010G128300 Sobic010G128300 Sobic009G136800--Sobic010G128300 Sobic009G136800--Sobic006G047200 Sobic009G136800--Sobic002G392000 Sobic002G289500 Sobic002G289500 Sobic009G136800--Sobic002G289500 Sobic001G234100--Sobic008G084800 Sobic001G234100--Sobic005G101000 Sobic001G234100--Sobic005G212800 Sobic001G234100--Sobic005G205400 Sobic001G234100--Sobic006G047200 Sobic001G234100--Sobic008G058600 Sobic001G234100--Sobic001G395900 Sobic005G176600 Sobic005G176600 Sobic001G234100--Sobic005G176600 Sobic001G234100--Sobic003G045650 Sobic005G101000--Sobic001G234100 Sobic005G101000--Sobic001G395900 Sobic005G101000--Sobic008G058600 Sobic005G101000--Sobic008G084800 Sobic005G101000--Sobic006G047200 Sobic005G101000--Sobic005G212800 Sobic005G101000--Sobic005G205400 Sobic005G101000--Sobic004G299500 Sobic007G202480 Sobic007G202480 Sobic005G101000--Sobic007G202480 Sobic004G299500--Sobic006G230100 Sobic004G299500--Sobic001G395900 Sobic004G299500--Sobic007G202480 Sobic005G069166 Sobic005G069166 Sobic004G299500--Sobic005G069166 Sobic006G229901 Sobic006G229901 Sobic004G299500--Sobic006G229901 Sobic007G015000 Sobic007G015000 Sobic004G299500--Sobic007G015000 Sobic005G069332 Sobic005G069332 Sobic004G299500--Sobic005G069332 Sobic001G153100 Sobic001G153100 Sobic004G299500--Sobic001G153100 Sobic004G299500--Sobic008G058600 Sobic001G181600 Sobic001G181600 Sobic005G219500--Sobic001G181600 Sobic003G154500 Sobic003G154500 Sobic005G219500--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic005G219500--Sobic001G218400 Sobic005G219500--Sobic007G015000 Sobic006G097900 Sobic006G097900 Sobic005G219500--Sobic006G097900 Sobic005G219500--Sobic006G230100 Sobic004G121600 Sobic004G121600 Sobic005G219500--Sobic004G121600 Sobic008G105800 Sobic008G105800 Sobic005G219500--Sobic008G105800 Sobic005G219500--Sobic007G202480 Sobic001G395900--Sobic007G202480 Sobic001G395900--Sobic004G299500 Sobic001G395900--Sobic005G101000 Sobic001G395900--Sobic006G230100 Sobic006G230200 Sobic006G230200 Sobic001G395900--Sobic006G230200 Sobic001G395900--Sobic008G058600 Sobic001G395900--Sobic006G229901 Sobic004G261500 Sobic004G261500 Sobic001G395900--Sobic004G261500 Sobic001G395900--Sobic005G069166 Sobic006G230100--Sobic004G299500 Sobic006G230100--Sobic001G395900 Sobic006G230100--Sobic007G202480 Sobic006G230100--Sobic007G015000 Sobic006G230100--Sobic005G069166 Sobic009G055300 Sobic009G055300 Sobic006G230100--Sobic009G055300 Sobic006G230100--Sobic006G230200 Sobic006G230100--Sobic001G153100 Sobic006G230100--Sobic006G229901
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.