Gene annotation
Transcriptome id Sobic.001G243100.2,Sobic.001G243100.1
Synonym ATARD2
Functional annotation 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
UniProt A0A1B6QKQ9 , A0A1B6QKP6 , C5X1F5
Pfam PF03079 PF07883
Panther DB PTHR23418 PTHR23418:SF0
NCBI CDD KOG2107; Uncharacterized conserved protein, contains double-stranded beta-helix domain
KEGG Orthology K08967; mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Gene Ontology GO:0010309; acireductone dioxygenase [iron(II)-requiring] activity


Orthologs (automatic annotation)
TAIR AT4G14710 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os03g06620.1 : 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a000763
Brachypodium KQK15715
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G243100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
2 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
3 Sobic.005G100800 initiation factor 2 subunit family domain containing protein, expressed K08963: methylthioribose-1-phosphate isomerase
4 Sobic.001G353200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
5 Sobic.002G041100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
6 Sobic.002G194600 integral membrane protein, putative, expressed -
7 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
8 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.006G030800 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
10 Sobic.010G055100 OsWAK63 - OsWAK receptor-like protein kinase, expressed -
11 Sobic.001G243150 - -
12 Sobic.010G067500 OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
13 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
14 Sobic.008G079800 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
15 Sobic.006G259700 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
16 Sobic.010G187500 CRAL/TRIO domain containing protein, expressed -
17 Sobic.004G079900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
18 Sobic.003G258800 glutamate synthase, chloroplast precursor, putative, expressed K00264: glutamate synthase (NADH)
19 Sobic.003G020500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.005G134600 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1


Gene co-expression network
sample Sobic001G243100 Sobic001G243100 Sobic005G110541 Sobic005G110541 Sobic001G243100--Sobic005G110541 Sobic007G193200 Sobic007G193200 Sobic001G243100--Sobic007G193200 Sobic005G100800 Sobic005G100800 Sobic001G243100--Sobic005G100800 Sobic001G353200 Sobic001G353200 Sobic001G243100--Sobic001G353200 Sobic002G041100 Sobic002G041100 Sobic001G243100--Sobic002G041100 Sobic002G194600 Sobic002G194600 Sobic001G243100--Sobic002G194600 Sobic005G115600 Sobic005G115600 Sobic001G243100--Sobic005G115600 Sobic001G443100 Sobic001G443100 Sobic001G243100--Sobic001G443100 Sobic006G030800 Sobic006G030800 Sobic001G243100--Sobic006G030800 Sobic005G110541--Sobic005G100800 Sobic005G110541--Sobic007G193200 Sobic005G110541--Sobic001G353200 Sobic010G187500 Sobic010G187500 Sobic005G110541--Sobic010G187500 Sobic004G261500 Sobic004G261500 Sobic005G110541--Sobic004G261500 Sobic005G110541--Sobic001G443100 Sobic007G212000 Sobic007G212000 Sobic005G110541--Sobic007G212000 Sobic005G110541--Sobic001G243100 Sobic004G299500 Sobic004G299500 Sobic005G110541--Sobic004G299500 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic001G181600 Sobic001G181600 Sobic007G193200--Sobic001G181600 Sobic003G154500 Sobic003G154500 Sobic007G193200--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic007G193200--Sobic001G218400 Sobic005G033000 Sobic005G033000 Sobic007G193200--Sobic005G033000 Sobic001G454900 Sobic001G454900 Sobic007G193200--Sobic001G454900 Sobic005G119900 Sobic005G119900 Sobic007G193200--Sobic005G119900 Sobic003G441800 Sobic003G441800 Sobic007G193200--Sobic003G441800 Sobic005G100800--Sobic007G193200 Sobic005G100800--Sobic005G110541 Sobic005G100800--Sobic004G261500 Sobic008G109400 Sobic008G109400 Sobic005G100800--Sobic008G109400 Sobic001G271300 Sobic001G271300 Sobic005G100800--Sobic001G271300 Sobic001G395900 Sobic001G395900 Sobic005G100800--Sobic001G395900 Sobic005G100800--Sobic003G154500 Sobic006G230200 Sobic006G230200 Sobic005G100800--Sobic006G230200 Sobic005G100800--Sobic002G041100 Sobic001G353200--Sobic007G193200 Sobic001G243150 Sobic001G243150 Sobic001G353200--Sobic001G243150 Sobic005G046400 Sobic005G046400 Sobic001G353200--Sobic005G046400 Sobic009G065700 Sobic009G065700 Sobic001G353200--Sobic009G065700 Sobic002G111900 Sobic002G111900 Sobic001G353200--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic001G353200--Sobic010G191600 Sobic009G225800 Sobic009G225800 Sobic001G353200--Sobic009G225800 Sobic001G353200--Sobic003G441800 Sobic002G289500 Sobic002G289500 Sobic001G353200--Sobic002G289500 Sobic002G041100--Sobic001G443100 Sobic006G230100 Sobic006G230100 Sobic002G041100--Sobic006G230100 Sobic002G082000 Sobic002G082000 Sobic002G041100--Sobic002G082000 Sobic002G041100--Sobic001G395900 Sobic002G041100--Sobic004G299500 Sobic005G097900 Sobic005G097900 Sobic002G041100--Sobic005G097900 Sobic002G041100--Sobic007G193200 Sobic007G015000 Sobic007G015000 Sobic002G041100--Sobic007G015000 Sobic002G041100--Sobic001G353200 Sobic008G158900 Sobic008G158900 Sobic002G194600--Sobic008G158900 Sobic008G055800 Sobic008G055800 Sobic002G194600--Sobic008G055800 Sobic010G155800 Sobic010G155800 Sobic002G194600--Sobic010G155800 Sobic002G194600--Sobic005G100800 Sobic002G194600--Sobic007G212000 Sobic002G194600--Sobic005G097900 Sobic002G194600--Sobic001G271300 Sobic010G152300 Sobic010G152300 Sobic002G194600--Sobic010G152300 Sobic002G194600--Sobic004G261500 Sobic005G115600--Sobic006G030800 Sobic009G017500 Sobic009G017500 Sobic005G115600--Sobic009G017500 Sobic003G279800 Sobic003G279800 Sobic005G115600--Sobic003G279800 Sobic002G383900 Sobic002G383900 Sobic005G115600--Sobic002G383900 Sobic003G157700 Sobic003G157700 Sobic005G115600--Sobic003G157700 Sobic002G083600 Sobic002G083600 Sobic005G115600--Sobic002G083600 Sobic006G256200 Sobic006G256200 Sobic005G115600--Sobic006G256200 Sobic003G258800 Sobic003G258800 Sobic005G115600--Sobic003G258800 Sobic003G105000 Sobic003G105000 Sobic005G115600--Sobic003G105000 Sobic001G443100--Sobic004G261500 Sobic001G443100--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic001G443100--Sobic005G101000 Sobic001G443100--Sobic002G082000 Sobic001G443100--Sobic006G230100 Sobic001G443100--Sobic003G154500 Sobic001G443100--Sobic005G033000 Sobic001G443100--Sobic006G230200 Sobic008G058600 Sobic008G058600 Sobic001G443100--Sobic008G058600 Sobic006G030800--Sobic005G115600 Sobic010G213600 Sobic010G213600 Sobic006G030800--Sobic010G213600 Sobic006G030800--Sobic005G100800 Sobic009G058400 Sobic009G058400 Sobic006G030800--Sobic009G058400 Sobic003G020500 Sobic003G020500 Sobic006G030800--Sobic003G020500 Sobic004G008600 Sobic004G008600 Sobic006G030800--Sobic004G008600 Sobic005G134200 Sobic005G134200 Sobic006G030800--Sobic005G134200 Sobic001G218500 Sobic001G218500 Sobic006G030800--Sobic001G218500 Sobic009G060700 Sobic009G060700 Sobic006G030800--Sobic009G060700
Octagon: transcription factors


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