Gene annotation
Transcriptome id Sobic.006G259700.1,Sobic.006G259700.2
Synonym ATMTK, Sb06g032270, MTK
Functional annotation methylthioribose kinase, putative, expressed
UniProt A0A1B6PNZ3 , A0A1B6PP10
Pfam PF01636
Panther DB PTHR34273 PTHR34273:SF1
NCBI CDD -
KEGG Orthology K00899; 5-methylthioribose kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G49820 : S-methyl-5-thioribose kinase
RAP-DB (Rice) LOC_Os04g57400.1 : methylthioribose kinase, putative, expressed
MaizeGDB (Corn) Zm00025a057338
Brachypodium KQJ85202
Barley HORVU2Hr1G122370.1 , HORVU2Hr1G122370.3 , HORVU2Hr1G122370.2
Wheat TraesCS2D02G545000 , TraesCS2B02G574100 , TraesCS2A02G543900
Populus -


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cDNA sequences
Sobic.006G259700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G041200 similar to LOC Os02g20360: tyrosine aminotransferase(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@similar to LOC.Os02g20360:tyrosine aminotranferase(PubMedID : 24655390)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
2 Sobic.009G003000 methionine S-methyltransferase, putative, expressed K08247: methionine S-methyltransferase
3 Sobic.008G150100 resistance protein, putative, expressed -
4 Sobic.001G142800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
5 Sobic.006G271500 phosphomannomutase, putative, expressed K17497: phosphomannomutase
6 Sobic.009G139900 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
7 Sobic.001G243100 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
8 Sobic.010G115500 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
9 Sobic.001G203400 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
10 Sobic.004G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
11 Sobic.003G344200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
12 Sobic.010G186000 expressed protein -
13 Sobic.005G053800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
14 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
15 Sobic.010G225701 - -
16 Sobic.010G123400 GRAM and C2 domains containing protein, putative, expressed -
17 Sobic.002G131200 Ser/Thr protein phosphatase family protein, putative, expressed -
18 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.001G355800 methyltransferase, putative, expressed -
20 Sobic.005G061801 - -


Gene co-expression network
sample Sobic006G259700 Sobic006G259700 Sobic002G041200 Sobic002G041200 Sobic006G259700--Sobic002G041200 Sobic009G003000 Sobic009G003000 Sobic006G259700--Sobic009G003000 Sobic008G150100 Sobic008G150100 Sobic006G259700--Sobic008G150100 Sobic001G142800 Sobic001G142800 Sobic006G259700--Sobic001G142800 Sobic006G271500 Sobic006G271500 Sobic006G259700--Sobic006G271500 Sobic009G139900 Sobic009G139900 Sobic006G259700--Sobic009G139900 Sobic001G243100 Sobic001G243100 Sobic006G259700--Sobic001G243100 Sobic010G115500 Sobic010G115500 Sobic006G259700--Sobic010G115500 Sobic001G203400 Sobic001G203400 Sobic006G259700--Sobic001G203400 Sobic002G041200--Sobic009G003000 Sobic002G041200--Sobic001G142800 Sobic002G041200--Sobic006G259700 Sobic002G041100 Sobic002G041100 Sobic002G041200--Sobic002G041100 Sobic007G021100 Sobic007G021100 Sobic002G041200--Sobic007G021100 Sobic005G110541 Sobic005G110541 Sobic002G041200--Sobic005G110541 Sobic004G238100 Sobic004G238100 Sobic002G041200--Sobic004G238100 Sobic005G100800 Sobic005G100800 Sobic002G041200--Sobic005G100800 Sobic001G353200 Sobic001G353200 Sobic002G041200--Sobic001G353200 Sobic009G003000--Sobic002G041200 Sobic009G003000--Sobic001G142800 Sobic009G003000--Sobic006G259700 Sobic009G003000--Sobic004G238100 Sobic010G225701 Sobic010G225701 Sobic009G003000--Sobic010G225701 Sobic009G003000--Sobic006G271500 Sobic006G024600 Sobic006G024600 Sobic009G003000--Sobic006G024600 Sobic009G246300 Sobic009G246300 Sobic009G003000--Sobic009G246300 Sobic001G261545 Sobic001G261545 Sobic009G003000--Sobic001G261545 Sobic008G150100--Sobic006G259700 Sobic010G122000 Sobic010G122000 Sobic008G150100--Sobic010G122000 Sobic003G192600 Sobic003G192600 Sobic008G150100--Sobic003G192600 Sobic001G438700 Sobic001G438700 Sobic008G150100--Sobic001G438700 Sobic004G103400 Sobic004G103400 Sobic008G150100--Sobic004G103400 Sobic008G133700 Sobic008G133700 Sobic008G150100--Sobic008G133700 Sobic008G150100--Sobic001G353200 Sobic003G344200 Sobic003G344200 Sobic008G150100--Sobic003G344200 Sobic004G153100 Sobic004G153100 Sobic008G150100--Sobic004G153100 Sobic001G142800--Sobic002G041200 Sobic001G142800--Sobic004G238100 Sobic001G142800--Sobic009G003000 Sobic001G142800--Sobic002G041100 Sobic001G142800--Sobic006G259700 Sobic003G134600 Sobic003G134600 Sobic001G142800--Sobic003G134600 Sobic009G176800 Sobic009G176800 Sobic001G142800--Sobic009G176800 Sobic001G142800--Sobic006G024600 Sobic001G142800--Sobic010G225701 Sobic002G230600 Sobic002G230600 Sobic006G271500--Sobic002G230600 Sobic002G128900 Sobic002G128900 Sobic006G271500--Sobic002G128900 Sobic006G271500--Sobic004G238100 Sobic009G155300 Sobic009G155300 Sobic006G271500--Sobic009G155300 Sobic004G121300 Sobic004G121300 Sobic006G271500--Sobic004G121300 Sobic006G271500--Sobic001G261545 Sobic010G050800 Sobic010G050800 Sobic006G271500--Sobic010G050800 Sobic001G085600 Sobic001G085600 Sobic006G271500--Sobic001G085600 Sobic008G037800 Sobic008G037800 Sobic006G271500--Sobic008G037800 Sobic004G136300 Sobic004G136300 Sobic009G139900--Sobic004G136300 Sobic002G166300 Sobic002G166300 Sobic009G139900--Sobic002G166300 Sobic010G138000 Sobic010G138000 Sobic009G139900--Sobic010G138000 Sobic003G233600 Sobic003G233600 Sobic009G139900--Sobic003G233600 Sobic004G127700 Sobic004G127700 Sobic009G139900--Sobic004G127700 Sobic009G143700 Sobic009G143700 Sobic009G139900--Sobic009G143700 Sobic003G273600 Sobic003G273600 Sobic009G139900--Sobic003G273600 Sobic007G054800 Sobic007G054800 Sobic009G139900--Sobic007G054800 Sobic001G333100 Sobic001G333100 Sobic009G139900--Sobic001G333100 Sobic001G243100--Sobic005G110541 Sobic007G193200 Sobic007G193200 Sobic001G243100--Sobic007G193200 Sobic001G243100--Sobic005G100800 Sobic001G243100--Sobic001G353200 Sobic001G243100--Sobic002G041100 Sobic002G194600 Sobic002G194600 Sobic001G243100--Sobic002G194600 Sobic005G115600 Sobic005G115600 Sobic001G243100--Sobic005G115600 Sobic001G443100 Sobic001G443100 Sobic001G243100--Sobic001G443100 Sobic006G030800 Sobic006G030800 Sobic001G243100--Sobic006G030800 Sobic003G087900 Sobic003G087900 Sobic010G115500--Sobic003G087900 Sobic010G123400 Sobic010G123400 Sobic010G115500--Sobic010G123400 Sobic001G258000 Sobic001G258000 Sobic010G115500--Sobic001G258000 Sobic002G120300 Sobic002G120300 Sobic010G115500--Sobic002G120300 Sobic010G115500--Sobic006G259700 Sobic008G046800 Sobic008G046800 Sobic010G115500--Sobic008G046800 Sobic005G053900 Sobic005G053900 Sobic010G115500--Sobic005G053900 Sobic001G057200 Sobic001G057200 Sobic010G115500--Sobic001G057200 Sobic006G000700 Sobic006G000700 Sobic010G115500--Sobic006G000700 Sobic005G187300 Sobic005G187300 Sobic001G203400--Sobic005G187300 Sobic001G203400--Sobic001G085600 Sobic004G023100 Sobic004G023100 Sobic001G203400--Sobic004G023100 Sobic010G094900 Sobic010G094900 Sobic001G203400--Sobic010G094900 Sobic001G203400--Sobic001G261545 Sobic003G196300 Sobic003G196300 Sobic001G203400--Sobic003G196300 Sobic006G219600 Sobic006G219600 Sobic001G203400--Sobic006G219600 Sobic005G059800 Sobic005G059800 Sobic001G203400--Sobic005G059800 Sobic010G032900 Sobic010G032900 Sobic001G203400--Sobic010G032900
Octagon: transcription factors


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