Gene annotation
Transcriptome id Sobic.002G041200.3,Sobic.002G041200.2,Sobic.002G041200.1
Synonym Sb02g003530
Functional annotation similar to LOC Os02g20360: tyrosine aminotransferase (PubMedID : 24655390)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
similar to LOC.Os02g20360:tyrosine aminotranferase (PubMedID : 24655390)
tyrosine aminotransferase, putative, expressed
UniProt A0A1B6Q949 , A0A1W0W275 , A0A1W0W296
Pfam PF01212 PF00155
Panther DB PTHR11751 PTHR11751:SF400
NCBI CDD -
KEGG Orthology K00815; tyrosine aminotransferase
Gene Ontology GO:0009058; biosynthetic process GO:0016829lyase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G36160 : Tyrosine transaminase family protein
RAP-DB (Rice) LOC_Os02g20360.1 : tyrosine aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a031096 , Zm00025a020264 , Zm00025a034312
Brachypodium KQJ94595
Barley HORVU1Hr1G071260.15 , HORVU1Hr1G071260.12 , HORVU1Hr1G071260.13 , HORVU1Hr1G071260.11
Wheat TraesCS1A02G291100 , TraesCS1D02G289800 , TraesCS1A02G291200 , TraesCS1D02G289800 , TraesCS1B02G300600
Populus -


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cDNA sequences
Sobic.002G041200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G003000 methionine S-methyltransferase, putative, expressed K08247: methionine S-methyltransferase
2 Sobic.001G142800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
3 Sobic.006G259700 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
4 Sobic.002G041100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
5 Sobic.007G021100 carrier, putative, expressed -
6 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
7 Sobic.004G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
8 Sobic.005G100800 initiation factor 2 subunit family domain containing protein, expressed K08963: methylthioribose-1-phosphate isomerase
9 Sobic.001G353200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
10 Sobic.010G055100 OsWAK63 - OsWAK receptor-like protein kinase, expressed -
11 Sobic.002G230700 - -
12 Sobic.008G150100 resistance protein, putative, expressed -
13 Sobic.003G192600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor-like kinase ARK1AS, putative, expressed -
14 Sobic.006G030800 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
15 Sobic.001G243100 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
16 Sobic.003G134600 expressed protein -
17 Sobic.002G120300 flavin monooxygenase, putative, expressed K11816: indole-3-pyruvate monooxygenase
18 Sobic.003G344200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
19 Sobic.009G176800 DUF567 domain containing protein, putative, expressed -
20 Sobic.005G050300 leucine-rich repeat receptor-like protein kinase 1, putative, expressed -


Gene co-expression network
sample Sobic002G041200 Sobic002G041200 Sobic009G003000 Sobic009G003000 Sobic002G041200--Sobic009G003000 Sobic001G142800 Sobic001G142800 Sobic002G041200--Sobic001G142800 Sobic006G259700 Sobic006G259700 Sobic002G041200--Sobic006G259700 Sobic002G041100 Sobic002G041100 Sobic002G041200--Sobic002G041100 Sobic007G021100 Sobic007G021100 Sobic002G041200--Sobic007G021100 Sobic005G110541 Sobic005G110541 Sobic002G041200--Sobic005G110541 Sobic004G238100 Sobic004G238100 Sobic002G041200--Sobic004G238100 Sobic005G100800 Sobic005G100800 Sobic002G041200--Sobic005G100800 Sobic001G353200 Sobic001G353200 Sobic002G041200--Sobic001G353200 Sobic009G003000--Sobic002G041200 Sobic009G003000--Sobic001G142800 Sobic009G003000--Sobic006G259700 Sobic009G003000--Sobic004G238100 Sobic010G225701 Sobic010G225701 Sobic009G003000--Sobic010G225701 Sobic006G271500 Sobic006G271500 Sobic009G003000--Sobic006G271500 Sobic006G024600 Sobic006G024600 Sobic009G003000--Sobic006G024600 Sobic009G246300 Sobic009G246300 Sobic009G003000--Sobic009G246300 Sobic001G261545 Sobic001G261545 Sobic009G003000--Sobic001G261545 Sobic001G142800--Sobic002G041200 Sobic001G142800--Sobic004G238100 Sobic001G142800--Sobic009G003000 Sobic001G142800--Sobic002G041100 Sobic001G142800--Sobic006G259700 Sobic003G134600 Sobic003G134600 Sobic001G142800--Sobic003G134600 Sobic009G176800 Sobic009G176800 Sobic001G142800--Sobic009G176800 Sobic001G142800--Sobic006G024600 Sobic001G142800--Sobic010G225701 Sobic006G259700--Sobic002G041200 Sobic006G259700--Sobic009G003000 Sobic008G150100 Sobic008G150100 Sobic006G259700--Sobic008G150100 Sobic006G259700--Sobic001G142800 Sobic006G259700--Sobic006G271500 Sobic009G139900 Sobic009G139900 Sobic006G259700--Sobic009G139900 Sobic001G243100 Sobic001G243100 Sobic006G259700--Sobic001G243100 Sobic010G115500 Sobic010G115500 Sobic006G259700--Sobic010G115500 Sobic001G203400 Sobic001G203400 Sobic006G259700--Sobic001G203400 Sobic001G443100 Sobic001G443100 Sobic002G041100--Sobic001G443100 Sobic006G230100 Sobic006G230100 Sobic002G041100--Sobic006G230100 Sobic002G082000 Sobic002G082000 Sobic002G041100--Sobic002G082000 Sobic001G395900 Sobic001G395900 Sobic002G041100--Sobic001G395900 Sobic004G299500 Sobic004G299500 Sobic002G041100--Sobic004G299500 Sobic005G097900 Sobic005G097900 Sobic002G041100--Sobic005G097900 Sobic007G193200 Sobic007G193200 Sobic002G041100--Sobic007G193200 Sobic007G015000 Sobic007G015000 Sobic002G041100--Sobic007G015000 Sobic002G041100--Sobic001G353200 Sobic008G109400 Sobic008G109400 Sobic007G021100--Sobic008G109400 Sobic007G021100--Sobic004G299500 Sobic007G021100--Sobic001G395900 Sobic007G202480 Sobic007G202480 Sobic007G021100--Sobic007G202480 Sobic001G153100 Sobic001G153100 Sobic007G021100--Sobic001G153100 Sobic006G229901 Sobic006G229901 Sobic007G021100--Sobic006G229901 Sobic001G415100 Sobic001G415100 Sobic007G021100--Sobic001G415100 Sobic007G021100--Sobic006G230100 Sobic006G230200 Sobic006G230200 Sobic007G021100--Sobic006G230200 Sobic005G110541--Sobic005G100800 Sobic005G110541--Sobic007G193200 Sobic005G110541--Sobic001G353200 Sobic010G187500 Sobic010G187500 Sobic005G110541--Sobic010G187500 Sobic004G261500 Sobic004G261500 Sobic005G110541--Sobic004G261500 Sobic005G110541--Sobic001G443100 Sobic007G212000 Sobic007G212000 Sobic005G110541--Sobic007G212000 Sobic005G110541--Sobic001G243100 Sobic005G110541--Sobic004G299500 Sobic004G238100--Sobic001G142800 Sobic005G091300 Sobic005G091300 Sobic004G238100--Sobic005G091300 Sobic004G238100--Sobic009G003000 Sobic004G238100--Sobic006G271500 Sobic008G119800 Sobic008G119800 Sobic004G238100--Sobic008G119800 Sobic004G238100--Sobic009G246300 Sobic004G238100--Sobic006G259700 Sobic004G113100 Sobic004G113100 Sobic004G238100--Sobic004G113100 Sobic004G238100--Sobic009G176800 Sobic005G100800--Sobic007G193200 Sobic005G100800--Sobic005G110541 Sobic005G100800--Sobic004G261500 Sobic005G100800--Sobic008G109400 Sobic001G271300 Sobic001G271300 Sobic005G100800--Sobic001G271300 Sobic005G100800--Sobic001G395900 Sobic003G154500 Sobic003G154500 Sobic005G100800--Sobic003G154500 Sobic005G100800--Sobic006G230200 Sobic005G100800--Sobic002G041100 Sobic001G353200--Sobic007G193200 Sobic001G243150 Sobic001G243150 Sobic001G353200--Sobic001G243150 Sobic005G046400 Sobic005G046400 Sobic001G353200--Sobic005G046400 Sobic009G065700 Sobic009G065700 Sobic001G353200--Sobic009G065700 Sobic002G111900 Sobic002G111900 Sobic001G353200--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic001G353200--Sobic010G191600 Sobic009G225800 Sobic009G225800 Sobic001G353200--Sobic009G225800 Sobic003G441800 Sobic003G441800 Sobic001G353200--Sobic003G441800 Sobic002G289500 Sobic002G289500 Sobic001G353200--Sobic002G289500
Octagon: transcription factors


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