Gene annotation
Transcriptome id Sobic.009G139900.1
Synonym ATGDI2, Sb09g020540, GDI2
Functional annotation rab GDP dissociation inhibitor alpha, putative, expressed
UniProt C5YXW7
Pfam PF00996
Panther DB PTHR11787 PTHR11787:SF10
NCBI CDD -
KEGG Orthology K17255; Rab GDP dissociation inhibitor
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59920 : RAB GDP dissociation inhibitor 2
RAP-DB (Rice) LOC_Os05g23860.1 : rab GDP dissociation inhibitor alpha, putative, expressed
MaizeGDB (Corn) Zm00025a037400 , Zm00025a039131 , Zm00025a043715 , Zm00025a015631 , Zm00025a037399
Brachypodium PNT76764 , KQK06220 , KQK22323 , KQK06219 , KQK20184
Barley HORVU1Hr1G064490.8 , HORVU1Hr1G064490.2 , HORVU1Hr1G064490.1 , HORVU1Hr1G064490.6 , HORVU1Hr1G064490.7 , HORVU1Hr1G064490.4 , HORVU1Hr1G064490.5 , HORVU4Hr1G059240.20 , HORVU1Hr1G064490.10 , HORVU1Hr1G064490.11 , HORVU1Hr1G064490.12 , HORVU1Hr1G064490.13 , HORVU1Hr1G064490.14 , HORVU1Hr1G064490.15 , HORVU4Hr1G059240.2 , HORVU4Hr1G059240.1 , HORVU4Hr1G059240.6 , HORVU4Hr1G059240.7 , HORVU4Hr1G059240.4 , HORVU4Hr1G059240.9 , HORVU1Hr1G064480.1 , HORVU1Hr1G064480.3 , HORVU1Hr1G064480.2 , HORVU4Hr1G059230.2 , HORVU4Hr1G059240.11 , HORVU4Hr1G059240.12 , HORVU4Hr1G059240.13 , HORVU4Hr1G059240.14 , HORVU4Hr1G059240.15 , HORVU4Hr1G059240.17 , HORVU4Hr1G059240.18 , HORVU4Hr1G059240.19 , HORVU5Hr1G009840.8 , HORVU5Hr1G009840.9 , HORVU4Hr1G059230.1 , HORVU5Hr1G009840.1 , HORVU5Hr1G009840.2 , HORVU5Hr1G009840.3 , HORVU5Hr1G009840.4 , HORVU5Hr1G009840.5 , HORVU5Hr1G009840.6 , HORVU5Hr1G009840.7
Wheat TraesCS1B02G271800 , TraesCS1B02G271800 , TraesCS5A02G041100 , TraesCS1B02G271700 , TraesCS1B02G271700 , TraesCS1D02G260900 , TraesCS1D02G260900 , TraesCS1A02G261000 , TraesCS1A02G261000 , TraesCS1A02G260900 , TraesCS1A02G260900 , TraesCS5B02G042400 , TraesCS5D02G048100 , TraesCS1D02G261000
Populus -


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cDNA sequences
Sobic.009G139900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G136300 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
2 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
3 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
4 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
5 Sobic.004G127700 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
6 Sobic.009G143700 no apical meristem protein, putative, expressed -
7 Sobic.003G273600 CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
8 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
9 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
10 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
11 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
12 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
13 Sobic.008G088806 - K16280: E3 ubiquitin-protein ligase RGLG
14 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
15 Sobic.008G004300 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
16 Sobic.008G070800 expressed protein -
17 Sobic.008G033500 nucleolar GTPase, putative, expressed -
18 Sobic.008G088857 - -
19 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.001G004400 - K14290: XPO1, exportin-1


Gene co-expression network
sample Sobic009G139900 Sobic009G139900 Sobic004G136300 Sobic004G136300 Sobic009G139900--Sobic004G136300 Sobic002G166300 Sobic002G166300 Sobic009G139900--Sobic002G166300 Sobic010G138000 Sobic010G138000 Sobic009G139900--Sobic010G138000 Sobic003G233600 Sobic003G233600 Sobic009G139900--Sobic003G233600 Sobic004G127700 Sobic004G127700 Sobic009G139900--Sobic004G127700 Sobic009G143700 Sobic009G143700 Sobic009G139900--Sobic009G143700 Sobic003G273600 Sobic003G273600 Sobic009G139900--Sobic003G273600 Sobic007G054800 Sobic007G054800 Sobic009G139900--Sobic007G054800 Sobic001G333100 Sobic001G333100 Sobic009G139900--Sobic001G333100 Sobic004G136300--Sobic010G138000 Sobic004G136300--Sobic009G139900 Sobic009G133500 Sobic009G133500 Sobic004G136300--Sobic009G133500 Sobic003G164200 Sobic003G164200 Sobic004G136300--Sobic003G164200 Sobic005G096400 Sobic005G096400 Sobic004G136300--Sobic005G096400 Sobic010G139600 Sobic010G139600 Sobic004G136300--Sobic010G139600 Sobic004G136300--Sobic003G233600 Sobic006G041600 Sobic006G041600 Sobic004G136300--Sobic006G041600 Sobic003G155900 Sobic003G155900 Sobic004G136300--Sobic003G155900 Sobic002G166300--Sobic003G273600 Sobic002G166300--Sobic003G233600 Sobic002G166300--Sobic009G139900 Sobic004G296400 Sobic004G296400 Sobic002G166300--Sobic004G296400 Sobic001G079200 Sobic001G079200 Sobic002G166300--Sobic001G079200 Sobic009G199200 Sobic009G199200 Sobic002G166300--Sobic009G199200 Sobic008G004600 Sobic008G004600 Sobic002G166300--Sobic008G004600 Sobic001G000200 Sobic001G000200 Sobic002G166300--Sobic001G000200 Sobic002G166300--Sobic004G136300 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic010G138000--Sobic007G103100 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700 Sobic003G233600--Sobic004G127700 Sobic003G233600--Sobic002G166300 Sobic003G233600--Sobic009G199200 Sobic010G205800 Sobic010G205800 Sobic003G233600--Sobic010G205800 Sobic003G233600--Sobic001G079200 Sobic003G233600--Sobic001G000200 Sobic003G233600--Sobic004G296400 Sobic003G233600--Sobic003G273600 Sobic003G233600--Sobic004G136300 Sobic004G127700--Sobic003G233600 Sobic009G094300 Sobic009G094300 Sobic004G127700--Sobic009G094300 Sobic002G308500 Sobic002G308500 Sobic004G127700--Sobic002G308500 Sobic004G339100 Sobic004G339100 Sobic004G127700--Sobic004G339100 Sobic001G120300 Sobic001G120300 Sobic004G127700--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic004G127700--Sobic001G111150 Sobic004G127700--Sobic009G139900 Sobic009G057300 Sobic009G057300 Sobic004G127700--Sobic009G057300 Sobic004G127700--Sobic004G136300 Sobic002G311100 Sobic002G311100 Sobic009G143700--Sobic002G311100 Sobic009G143700--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic009G143700--Sobic009G109925 Sobic010G004100 Sobic010G004100 Sobic009G143700--Sobic010G004100 Sobic003G110000 Sobic003G110000 Sobic009G143700--Sobic003G110000 Sobic009G143700--Sobic009G139900 Sobic003G264100 Sobic003G264100 Sobic009G143700--Sobic003G264100 Sobic009G143700--Sobic007G054800 Sobic003G194100 Sobic003G194100 Sobic009G143700--Sobic003G194100 Sobic003G273600--Sobic002G166300 Sobic003G273600--Sobic003G233600 Sobic003G273600--Sobic001G079200 Sobic003G273600--Sobic009G139900 Sobic003G273600--Sobic004G127700 Sobic003G273600--Sobic008G004600 Sobic003G273600--Sobic004G296400 Sobic010G002400 Sobic010G002400 Sobic003G273600--Sobic010G002400 Sobic005G044800 Sobic005G044800 Sobic003G273600--Sobic005G044800 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic002G256700 Sobic002G256700 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500
Octagon: transcription factors


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