Gene annotation
Transcriptome id Sobic.008G004300.3,Sobic.008G004300.4,Sobic.008G004300.2,Sobic.008G004300.1
Synonym Sb08g000520
Functional annotation outer membrane protein, OMP85 family, putative, expressed
UniProt C5YQ21 , A0A1Z5R554
Pfam PF01103
Panther DB PTHR12815 PTHR12815:SF15
NCBI CDD KOG2602; Predicted cell surface protein homologous to bacterial outer membrane proteins
KEGG Orthology K07277; SAM50, TOB55, outer membrane protein insertion porin family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05520 : Outer membrane OMP85 family protein
RAP-DB (Rice) LOC_Os12g01500.1 : outer membrane protein, OMP85 family, putative, expressed
MaizeGDB (Corn) Zm00025a033269 , Zm00025a053660
Brachypodium KQJ92634 , KQJ92635 , PNT65597
Barley -
Wheat TraesCS4B02G365800 , TraesCS5D02G158200 , TraesCS5D02G158200 , TraesCS5A02G152900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G004300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II
2 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
3 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
4 Sobic.005G004100 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
5 Sobic.009G139900 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
6 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
7 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
8 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
9 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
10 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
12 Sobic.002G131500 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
14 Sobic.008G033500 nucleolar GTPase, putative, expressed -
15 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
16 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
17 Sobic.004G175300 leucine-rich repeat receptor-like protein kinase 1, putative, expressed K03660: N-glycosylase/DNA lyase
18 Sobic.008G000400 GHMP kinases ATP-binding protein, putative, expressed K16190: glucuronokinase
19 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
20 Sobic.008G048300 transcription elongation factor protein, putative, expressed -


Gene co-expression network
sample Sobic008G004300 Sobic008G004300 Sobic004G290000 Sobic004G290000 Sobic008G004300--Sobic004G290000 Sobic002G166300 Sobic002G166300 Sobic008G004300--Sobic002G166300 Sobic001G301200 Sobic001G301200 Sobic008G004300--Sobic001G301200 Sobic005G004100 Sobic005G004100 Sobic008G004300--Sobic005G004100 Sobic009G139900 Sobic009G139900 Sobic008G004300--Sobic009G139900 Sobic001G434200 Sobic001G434200 Sobic008G004300--Sobic001G434200 Sobic002G209400 Sobic002G209400 Sobic008G004300--Sobic002G209400 Sobic001G333100 Sobic001G333100 Sobic008G004300--Sobic001G333100 Sobic010G206300 Sobic010G206300 Sobic008G004300--Sobic010G206300 Sobic006G219300 Sobic006G219300 Sobic004G290000--Sobic006G219300 Sobic004G290000--Sobic008G004300 Sobic004G253100 Sobic004G253100 Sobic004G290000--Sobic004G253100 Sobic004G023100 Sobic004G023100 Sobic004G290000--Sobic004G023100 Sobic004G290000--Sobic002G166300 Sobic001G004400 Sobic001G004400 Sobic004G290000--Sobic001G004400 Sobic005G096400 Sobic005G096400 Sobic004G290000--Sobic005G096400 Sobic004G290000--Sobic009G139900 Sobic002G428800 Sobic002G428800 Sobic004G290000--Sobic002G428800 Sobic003G273600 Sobic003G273600 Sobic002G166300--Sobic003G273600 Sobic003G233600 Sobic003G233600 Sobic002G166300--Sobic003G233600 Sobic002G166300--Sobic009G139900 Sobic004G296400 Sobic004G296400 Sobic002G166300--Sobic004G296400 Sobic001G079200 Sobic001G079200 Sobic002G166300--Sobic001G079200 Sobic009G199200 Sobic009G199200 Sobic002G166300--Sobic009G199200 Sobic008G004600 Sobic008G004600 Sobic002G166300--Sobic008G004600 Sobic001G000200 Sobic001G000200 Sobic002G166300--Sobic001G000200 Sobic004G136300 Sobic004G136300 Sobic002G166300--Sobic004G136300 Sobic004G337800 Sobic004G337800 Sobic001G301200--Sobic004G337800 Sobic001G449900 Sobic001G449900 Sobic001G301200--Sobic001G449900 Sobic006G021700 Sobic006G021700 Sobic001G301200--Sobic006G021700 Sobic003G029600 Sobic003G029600 Sobic001G301200--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic001G301200--Sobic008G124800 Sobic001G404600 Sobic001G404600 Sobic001G301200--Sobic001G404600 Sobic002G340900 Sobic002G340900 Sobic001G301200--Sobic002G340900 Sobic002G308500 Sobic002G308500 Sobic001G301200--Sobic002G308500 Sobic003G171400 Sobic003G171400 Sobic001G301200--Sobic003G171400 Sobic009G256000 Sobic009G256000 Sobic005G004100--Sobic009G256000 Sobic004G060100 Sobic004G060100 Sobic005G004100--Sobic004G060100 Sobic004G283600 Sobic004G283600 Sobic005G004100--Sobic004G283600 Sobic005G018800 Sobic005G018800 Sobic005G004100--Sobic005G018800 Sobic007G161200 Sobic007G161200 Sobic005G004100--Sobic007G161200 Sobic008G021200 Sobic008G021200 Sobic005G004100--Sobic008G021200 Sobic005G004100--Sobic008G004300 Sobic002G301200 Sobic002G301200 Sobic005G004100--Sobic002G301200 Sobic002G410700 Sobic002G410700 Sobic005G004100--Sobic002G410700 Sobic009G139900--Sobic004G136300 Sobic009G139900--Sobic002G166300 Sobic010G138000 Sobic010G138000 Sobic009G139900--Sobic010G138000 Sobic009G139900--Sobic003G233600 Sobic004G127700 Sobic004G127700 Sobic009G139900--Sobic004G127700 Sobic009G143700 Sobic009G143700 Sobic009G139900--Sobic009G143700 Sobic009G139900--Sobic003G273600 Sobic007G054800 Sobic007G054800 Sobic009G139900--Sobic007G054800 Sobic009G139900--Sobic001G333100 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic001G263000 Sobic001G263000 Sobic002G209400--Sobic001G263000 Sobic006G244700 Sobic006G244700 Sobic002G209400--Sobic006G244700 Sobic004G232800 Sobic004G232800 Sobic002G209400--Sobic004G232800 Sobic007G061400 Sobic007G061400 Sobic002G209400--Sobic007G061400 Sobic007G188300 Sobic007G188300 Sobic002G209400--Sobic007G188300 Sobic010G057900 Sobic010G057900 Sobic002G209400--Sobic010G057900 Sobic002G111200 Sobic002G111200 Sobic002G209400--Sobic002G111200 Sobic005G111900 Sobic005G111900 Sobic002G209400--Sobic005G111900 Sobic002G209400--Sobic001G014800 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic001G455800 Sobic001G455800 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.