Gene annotation
Transcriptome id Sobic.004G175300.3
Synonym ATOGG1, Sb04g022540, OGG1
Functional annotation leucine-rich repeat receptor-like protein kinase 1, putative, expressed
UniProt C5XU78
Pfam PF00730 PF07934
Panther DB PTHR10242 PTHR10242:SF2
NCBI CDD KOG2875; 8-oxoguanine DNA glycosylase
KEGG Orthology K03660; N-glycosylase/DNA lyase
Gene Ontology GO:0006284; base-excision repair GO:0008534oxidized purine nucleobase lesion DNA N-glycosylase activity GO:0006289nucleotide-excision repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT1G21710 : 8-oxoguanine-DNA glycosylase 1
RAP-DB (Rice) LOC_Os02g34750.1 : leucine-rich repeat receptor-like protein kinase 1, putative, expressed
MaizeGDB (Corn) Zm00025a020634
Brachypodium KQJ99865
Barley HORVU3Hr1G013740.4 , HORVU3Hr1G013740.2 , HORVU3Hr1G013740.3
Wheat TraesCS3D02G075400 , TraesCS3B02G089300 , TraesCS3B02G089300 , TraesCS3A02G075400 , TraesCS3A02G075400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
2 Sobic.007G188300 integral membrane family protein, putative, expressed -
3 Sobic.004G358600 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
4 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
5 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
6 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
7 Sobic.001G120500 toc64, putative, expressed -
8 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
9 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
10 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.008G004300 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
12 Sobic.002G131500 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
14 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
15 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
16 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
17 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
18 Sobic.003G444600 TGD2, putative, expressed -
19 Sobic.008G033500 nucleolar GTPase, putative, expressed -
20 Sobic.001G276200 ACI13, putative, expressed -


Gene co-expression network
sample Sobic004G175300 Sobic004G175300 Sobic001G434200 Sobic001G434200 Sobic004G175300--Sobic001G434200 Sobic007G188300 Sobic007G188300 Sobic004G175300--Sobic007G188300 Sobic004G358600 Sobic004G358600 Sobic004G175300--Sobic004G358600 Sobic002G209400 Sobic002G209400 Sobic004G175300--Sobic002G209400 Sobic002G166300 Sobic002G166300 Sobic004G175300--Sobic002G166300 Sobic004G171200 Sobic004G171200 Sobic004G175300--Sobic004G171200 Sobic001G120500 Sobic001G120500 Sobic004G175300--Sobic001G120500 Sobic001G431000 Sobic001G431000 Sobic004G175300--Sobic001G431000 Sobic010G138000 Sobic010G138000 Sobic004G175300--Sobic010G138000 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G333100 Sobic001G333100 Sobic001G434200--Sobic001G333100 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic009G149500 Sobic009G149500 Sobic007G188300--Sobic009G149500 Sobic001G085100 Sobic001G085100 Sobic007G188300--Sobic001G085100 Sobic010G205300 Sobic010G205300 Sobic007G188300--Sobic010G205300 Sobic006G244700 Sobic006G244700 Sobic007G188300--Sobic006G244700 Sobic001G263000 Sobic001G263000 Sobic007G188300--Sobic001G263000 Sobic007G188300--Sobic001G014800 Sobic007G014900 Sobic007G014900 Sobic007G188300--Sobic007G014900 Sobic004G356900 Sobic004G356900 Sobic007G188300--Sobic004G356900 Sobic007G188300--Sobic002G209400 Sobic005G044800 Sobic005G044800 Sobic004G358600--Sobic005G044800 Sobic003G012200 Sobic003G012200 Sobic004G358600--Sobic003G012200 Sobic001G000200 Sobic001G000200 Sobic004G358600--Sobic001G000200 Sobic010G205800 Sobic010G205800 Sobic004G358600--Sobic010G205800 Sobic010G002400 Sobic010G002400 Sobic004G358600--Sobic010G002400 Sobic008G004600 Sobic008G004600 Sobic004G358600--Sobic008G004600 Sobic002G361300 Sobic002G361300 Sobic004G358600--Sobic002G361300 Sobic003G372000 Sobic003G372000 Sobic004G358600--Sobic003G372000 Sobic009G199200 Sobic009G199200 Sobic004G358600--Sobic009G199200 Sobic002G209400--Sobic001G263000 Sobic002G209400--Sobic006G244700 Sobic004G232800 Sobic004G232800 Sobic002G209400--Sobic004G232800 Sobic007G061400 Sobic007G061400 Sobic002G209400--Sobic007G061400 Sobic002G209400--Sobic007G188300 Sobic010G057900 Sobic010G057900 Sobic002G209400--Sobic010G057900 Sobic002G111200 Sobic002G111200 Sobic002G209400--Sobic002G111200 Sobic005G111900 Sobic005G111900 Sobic002G209400--Sobic005G111900 Sobic002G209400--Sobic001G014800 Sobic003G273600 Sobic003G273600 Sobic002G166300--Sobic003G273600 Sobic003G233600 Sobic003G233600 Sobic002G166300--Sobic003G233600 Sobic009G139900 Sobic009G139900 Sobic002G166300--Sobic009G139900 Sobic004G296400 Sobic004G296400 Sobic002G166300--Sobic004G296400 Sobic001G079200 Sobic001G079200 Sobic002G166300--Sobic001G079200 Sobic002G166300--Sobic009G199200 Sobic002G166300--Sobic008G004600 Sobic002G166300--Sobic001G000200 Sobic004G136300 Sobic004G136300 Sobic002G166300--Sobic004G136300 Sobic008G051200 Sobic008G051200 Sobic004G171200--Sobic008G051200 Sobic002G298100 Sobic002G298100 Sobic004G171200--Sobic002G298100 Sobic004G171200--Sobic001G434200 Sobic010G059500 Sobic010G059500 Sobic004G171200--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G171200--Sobic001G493200 Sobic004G171200--Sobic001G120500 Sobic009G239200 Sobic009G239200 Sobic004G171200--Sobic009G239200 Sobic006G155100 Sobic006G155100 Sobic004G171200--Sobic006G155100 Sobic007G097400 Sobic007G097400 Sobic004G171200--Sobic007G097400 Sobic010G265300 Sobic010G265300 Sobic001G120500--Sobic010G265300 Sobic005G172500 Sobic005G172500 Sobic001G120500--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic001G120500--Sobic001G244300 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic001G120500--Sobic008G051200 Sobic009G056200 Sobic009G056200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500 Sobic006G126100 Sobic006G126100 Sobic001G431000--Sobic006G126100 Sobic006G073200 Sobic006G073200 Sobic001G431000--Sobic006G073200 Sobic001G227400 Sobic001G227400 Sobic001G431000--Sobic001G227400 Sobic006G077200 Sobic006G077200 Sobic001G431000--Sobic006G077200 Sobic001G404600 Sobic001G404600 Sobic001G431000--Sobic001G404600 Sobic004G257100 Sobic004G257100 Sobic001G431000--Sobic004G257100 Sobic008G157200 Sobic008G157200 Sobic001G431000--Sobic008G157200 Sobic004G241900 Sobic004G241900 Sobic001G431000--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic001G431000--Sobic001G449900 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic010G138000--Sobic007G103100 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700
Octagon: transcription factors


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