Gene annotation
Transcriptome id Sobic.002G383900.1
Synonym Sb02g040020, SBH1
Functional annotation sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5X2L9
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF43
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os07g43460.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) Zm00025a015256
Brachypodium KQK15099
Barley -
Wheat TraesCS2A02G158400 , TraesCS2D02G165300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
2 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
3 Sobic.007G020700 ACT domain containing protein, expressed -
4 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
5 Sobic.005G219700 Leucine Rich Repeat family protein, expressed -
6 Sobic.007G106500 "C3 PTPC, unknown so far"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
7 Sobic.001G365200 aminotransferase domain containing protein, putative, expressed -
8 Sobic.002G207000 - -
9 Sobic.001G314000 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.003G368000 OsFBT3 - F-box and tubby domain containing protein, expressed -
11 Sobic.007G192000 ACR5, putative, expressed -
12 Sobic.004G008600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
13 Sobic.003G287450 - -
14 Sobic.009G079900 endoglucanase precursor, putative, expressed -
15 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.005G052700 ZOS11-01 - C2H2 zinc finger protein, expressed -
17 Sobic.007G172500 zinc finger family protein, putative, expressed -
18 Sobic.001G067800 metal cation transporter, putative, expressed K07238: TC.ZIP, zupT, ZRT3, zinc transporter, ZIP family
19 Sobic.002G167000 "C3 PTPC, housekeeping gene"(PubMedID : 2308851)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
20 Sobic.010G269000 bZIP transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic002G383900 Sobic002G383900 Sobic004G161900 Sobic004G161900 Sobic002G383900--Sobic004G161900 Sobic001G263900 Sobic001G263900 Sobic002G383900--Sobic001G263900 Sobic007G020700 Sobic007G020700 Sobic002G383900--Sobic007G020700 Sobic005G022500 Sobic005G022500 Sobic002G383900--Sobic005G022500 Sobic005G219700 Sobic005G219700 Sobic002G383900--Sobic005G219700 Sobic007G106500 Sobic007G106500 Sobic002G383900--Sobic007G106500 Sobic001G365200 Sobic001G365200 Sobic002G383900--Sobic001G365200 Sobic002G207000 Sobic002G207000 Sobic002G383900--Sobic002G207000 Sobic001G314000 Sobic001G314000 Sobic002G383900--Sobic001G314000 Sobic003G368000 Sobic003G368000 Sobic004G161900--Sobic003G368000 Sobic003G017601 Sobic003G017601 Sobic004G161900--Sobic003G017601 Sobic010G045400 Sobic010G045400 Sobic004G161900--Sobic010G045400 Sobic008G037900 Sobic008G037900 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic001G218500 Sobic001G218500 Sobic004G161900--Sobic001G218500 Sobic003G079100 Sobic003G079100 Sobic004G161900--Sobic003G079100 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic009G221900 Sobic009G221900 Sobic001G263900--Sobic009G221900 Sobic003G099166 Sobic003G099166 Sobic001G263900--Sobic003G099166 Sobic001G250100 Sobic001G250100 Sobic001G263900--Sobic001G250100 Sobic009G017500 Sobic009G017500 Sobic001G263900--Sobic009G017500 Sobic001G263900--Sobic002G383900 Sobic002G030800 Sobic002G030800 Sobic001G263900--Sobic002G030800 Sobic001G471800 Sobic001G471800 Sobic001G263900--Sobic001G471800 Sobic002G085800 Sobic002G085800 Sobic001G263900--Sobic002G085800 Sobic007G047300 Sobic007G047300 Sobic001G263900--Sobic007G047300 Sobic002G029600 Sobic002G029600 Sobic007G020700--Sobic002G029600 Sobic005G071900 Sobic005G071900 Sobic007G020700--Sobic005G071900 Sobic006G009700 Sobic006G009700 Sobic007G020700--Sobic006G009700 Sobic004G312500 Sobic004G312500 Sobic007G020700--Sobic004G312500 Sobic009G060700 Sobic009G060700 Sobic007G020700--Sobic009G060700 Sobic002G019100 Sobic002G019100 Sobic007G020700--Sobic002G019100 Sobic006G108300 Sobic006G108300 Sobic007G020700--Sobic006G108300 Sobic009G079900 Sobic009G079900 Sobic007G020700--Sobic009G079900 Sobic007G020700--Sobic003G079100 Sobic001G506600 Sobic001G506600 Sobic005G022500--Sobic001G506600 Sobic005G022500--Sobic005G219700 Sobic001G002800 Sobic001G002800 Sobic005G022500--Sobic001G002800 Sobic001G503000 Sobic001G503000 Sobic005G022500--Sobic001G503000 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic007G172500 Sobic007G172500 Sobic005G022500--Sobic007G172500 Sobic002G376100 Sobic002G376100 Sobic005G022500--Sobic002G376100 Sobic003G001300 Sobic003G001300 Sobic005G219700--Sobic003G001300 Sobic002G003400 Sobic002G003400 Sobic005G219700--Sobic002G003400 Sobic005G219700--Sobic009G060700 Sobic006G224500 Sobic006G224500 Sobic005G219700--Sobic006G224500 Sobic008G077900 Sobic008G077900 Sobic005G219700--Sobic008G077900 Sobic004G322000 Sobic004G322000 Sobic005G219700--Sobic004G322000 Sobic005G219700--Sobic001G506600 Sobic005G219700--Sobic007G020700 Sobic005G219700--Sobic002G029600 Sobic007G038600 Sobic007G038600 Sobic007G106500--Sobic007G038600 Sobic001G173700 Sobic001G173700 Sobic007G106500--Sobic001G173700 Sobic001G238500 Sobic001G238500 Sobic007G106500--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic007G106500--Sobic004G126500 Sobic001G131001 Sobic001G131001 Sobic007G106500--Sobic001G131001 Sobic005G104200 Sobic005G104200 Sobic007G106500--Sobic005G104200 Sobic007G106500--Sobic007G172500 Sobic007G106500--Sobic007G020700 Sobic001G464300 Sobic001G464300 Sobic007G106500--Sobic001G464300 Sobic001G365200--Sobic004G161900 Sobic001G365200--Sobic003G368000 Sobic001G365200--Sobic002G383900 Sobic003G105000 Sobic003G105000 Sobic001G365200--Sobic003G105000 Sobic001G365200--Sobic005G022500 Sobic001G365200--Sobic010G045400 Sobic007G119500 Sobic007G119500 Sobic001G365200--Sobic007G119500 Sobic006G000600 Sobic006G000600 Sobic001G365200--Sobic006G000600 Sobic001G365200--Sobic008G037900 Sobic002G207000--Sobic003G079100 Sobic003G255600 Sobic003G255600 Sobic002G207000--Sobic003G255600 Sobic002G207000--Sobic001G471800 Sobic002G207000--Sobic006G224500 Sobic002G082000 Sobic002G082000 Sobic002G207000--Sobic002G082000 Sobic007G015100 Sobic007G015100 Sobic002G207000--Sobic007G015100 Sobic001G514700 Sobic001G514700 Sobic002G207000--Sobic001G514700 Sobic002G207000--Sobic006G108300 Sobic005G182800 Sobic005G182800 Sobic002G207000--Sobic005G182800 Sobic003G183300 Sobic003G183300 Sobic001G314000--Sobic003G183300 Sobic001G314000--Sobic009G079900 Sobic001G514300 Sobic001G514300 Sobic001G314000--Sobic001G514300 Sobic003G426200 Sobic003G426200 Sobic001G314000--Sobic003G426200 Sobic007G206800 Sobic007G206800 Sobic001G314000--Sobic007G206800 Sobic002G391400 Sobic002G391400 Sobic001G314000--Sobic002G391400 Sobic005G052700 Sobic005G052700 Sobic001G314000--Sobic005G052700 Sobic002G334000 Sobic002G334000 Sobic001G314000--Sobic002G334000 Sobic006G205700 Sobic006G205700 Sobic001G314000--Sobic006G205700
Octagon: transcription factors


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