Gene annotation
Transcriptome id Sobic.002G167000.1
Synonym PEPC1, phosphoenolpyruvate carboxylase 2 (SbPPC2), CP28;PEPC, ATPPC1, PPC1, Sb02g021090, ATPEPC1
Functional annotation "C3 PTPC, housekeeping gene" (PubMedID : 2308851)
phosphoenolphyruvate carboxylase (PubMedID : 26904072)
phosphoenolpyruvate carboxylase, putative, expressed
UniProt C5X951 , P29194
Pfam PF00311
Panther DB PTHR30523 PTHR30523:SF8
NCBI CDD -
KEGG Orthology K01595; phosphoenolpyruvate carboxylase
Gene Ontology GO:0015977; carbon fixation GO:0008964phosphoenolpyruvate carboxylase activity GO:0006099tricarboxylic acid cycle


Orthologs (automatic annotation)
TAIR AT1G53310 : phosphoenolpyruvate carboxylase 1
RAP-DB (Rice) LOC_Os09g14670.1 : phosphoenolpyruvate carboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a050966 , Zm00025a019988 , Zm00025a034476 , Zm00025a046442 , Zm00025a039995
Brachypodium KQK18156 , KQK18155 , KQJ94205 , KQJ89819
Barley HORVU5Hr1G055350.5 , HORVU5Hr1G055350.4 , HORVU5Hr1G055350.7 , HORVU5Hr1G055350.6 , HORVU5Hr1G055350.1 , HORVU5Hr1G055350.3 , HORVU5Hr1G055350.2 , HORVU5Hr1G055350.9 , HORVU5Hr1G055350.8 , HORVU3Hr1G073020.9 , HORVU3Hr1G073020.8 , HORVU3Hr1G073020.1 , HORVU3Hr1G073020.3 , HORVU3Hr1G073020.2 , HORVU3Hr1G073020.5 , HORVU3Hr1G073020.7 , HORVU3Hr1G073020.6 , HORVU6Hr1G048410.1 , HORVU6Hr1G048410.3 , HORVU6Hr1G048410.2 , HORVU6Hr1G048410.6 , HORVU6Hr1G048410.5 , HORVU6Hr1G048410.4 , HORVU6Hr1G048410.12 , HORVU6Hr1G048410.11 , HORVU6Hr1G048410.10 , HORVU6Hr1G048410.14 , HORVU3Hr1G073020.11 , HORVU3Hr1G073020.10 , HORVU3Hr1G073020.4 , HORVU7Hr1G080510.9 , HORVU5Hr1G055350.12 , HORVU5Hr1G055350.11 , HORVU5Hr1G055350.10 , HORVU7Hr1G080510.8 , HORVU7Hr1G080510.3 , HORVU7Hr1G080510.2 , HORVU7Hr1G080510.1 , HORVU7Hr1G080510.7 , HORVU7Hr1G080510.6 , HORVU7Hr1G080510.5 , HORVU7Hr1G080510.4
Wheat TraesCS6B02G223100 , TraesCS3B02G329800 , TraesCS7D02G333900 , TraesCS6A02G195600 , TraesCS7A02G345400 , TraesCS5B02G179800 , TraesCS6D02G183200 , TraesCS6D02G183200 , TraesCS6D02G183200 , TraesCS5A02G181800 , TraesCS7B02G237900 , TraesCS5D02G186200
Populus PNT12858 , PNT12859 , PNT12853 , PNT12856 , PNT12857 , PNT12854 , PNT12855 , PNT50915 , PNT50914 , PNT50916


JBrowse

Open New Page


cDNA sequences
Sobic.002G167000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
2 Sobic.002G207000 - -
3 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
4 Sobic.006G108300 expressed protein -
5 Sobic.007G172500 zinc finger family protein, putative, expressed -
6 Sobic.002G081850 - -
7 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
8 Sobic.002G254900 membrane protein, putative, expressed -
9 Sobic.003G287450 - -
10 Sobic.010G096700 leaf senescence related protein, putative, expressed -
11 Sobic.004G339800 phosphate transporter 1, putative, expressed -
12 Sobic.007G154100 aspartic proteinase nepenthesin precursor, putative, expressed -
13 Sobic.001G514700 "Cytochrome P450, family 78,"("PubMedID : 26759170,PubMedID : 24597475")@cytochrome P450, putative, expressed -
14 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
15 Sobic.002G411000 AP2 domain containing protein, expressed -
16 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
17 Sobic.004G312500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
18 Sobic.005G092000 resistance protein, putative, expressed -
19 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
20 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G167000 Sobic002G167000 Sobic002G376100 Sobic002G376100 Sobic002G167000--Sobic002G376100 Sobic002G207000 Sobic002G207000 Sobic002G167000--Sobic002G207000 Sobic001G002800 Sobic001G002800 Sobic002G167000--Sobic001G002800 Sobic006G108300 Sobic006G108300 Sobic002G167000--Sobic006G108300 Sobic007G172500 Sobic007G172500 Sobic002G167000--Sobic007G172500 Sobic002G081850 Sobic002G081850 Sobic002G167000--Sobic002G081850 Sobic005G022500 Sobic005G022500 Sobic002G167000--Sobic005G022500 Sobic002G254900 Sobic002G254900 Sobic002G167000--Sobic002G254900 Sobic003G287450 Sobic003G287450 Sobic002G167000--Sobic003G287450 Sobic007G154100 Sobic007G154100 Sobic002G376100--Sobic007G154100 Sobic004G009200 Sobic004G009200 Sobic002G376100--Sobic004G009200 Sobic002G391900 Sobic002G391900 Sobic002G376100--Sobic002G391900 Sobic010G152500 Sobic010G152500 Sobic002G376100--Sobic010G152500 Sobic003G382200 Sobic003G382200 Sobic002G376100--Sobic003G382200 Sobic005G066300 Sobic005G066300 Sobic002G376100--Sobic005G066300 Sobic009G106100 Sobic009G106100 Sobic002G376100--Sobic009G106100 Sobic005G071900 Sobic005G071900 Sobic002G376100--Sobic005G071900 Sobic002G376100--Sobic006G108300 Sobic003G079100 Sobic003G079100 Sobic002G207000--Sobic003G079100 Sobic003G255600 Sobic003G255600 Sobic002G207000--Sobic003G255600 Sobic001G471800 Sobic001G471800 Sobic002G207000--Sobic001G471800 Sobic006G224500 Sobic006G224500 Sobic002G207000--Sobic006G224500 Sobic002G082000 Sobic002G082000 Sobic002G207000--Sobic002G082000 Sobic007G015100 Sobic007G015100 Sobic002G207000--Sobic007G015100 Sobic001G514700 Sobic001G514700 Sobic002G207000--Sobic001G514700 Sobic002G207000--Sobic006G108300 Sobic005G182800 Sobic005G182800 Sobic002G207000--Sobic005G182800 Sobic001G002800--Sobic002G254900 Sobic001G503000 Sobic001G503000 Sobic001G002800--Sobic001G503000 Sobic007G090472 Sobic007G090472 Sobic001G002800--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic010G096700 Sobic010G096700 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G506600 Sobic001G506600 Sobic001G002800--Sobic001G506600 Sobic004G312500 Sobic004G312500 Sobic006G108300--Sobic004G312500 Sobic006G108300--Sobic005G071900 Sobic006G108300--Sobic007G154100 Sobic002G411000 Sobic002G411000 Sobic006G108300--Sobic002G411000 Sobic006G009700 Sobic006G009700 Sobic006G108300--Sobic006G009700 Sobic006G108300--Sobic003G079100 Sobic006G108300--Sobic006G209000 Sobic002G029600 Sobic002G029600 Sobic006G108300--Sobic002G029600 Sobic002G019100 Sobic002G019100 Sobic006G108300--Sobic002G019100 Sobic001G238500 Sobic001G238500 Sobic007G172500--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic007G172500--Sobic004G126500 Sobic007G172500--Sobic006G009700 Sobic007G172500--Sobic004G312500 Sobic005G104200 Sobic005G104200 Sobic007G172500--Sobic005G104200 Sobic007G172500--Sobic006G108300 Sobic007G020700 Sobic007G020700 Sobic007G172500--Sobic007G020700 Sobic007G172500--Sobic005G022500 Sobic007G172500--Sobic002G411000 Sobic005G197350 Sobic005G197350 Sobic002G081850--Sobic005G197350 Sobic005G066366 Sobic005G066366 Sobic002G081850--Sobic005G066366 Sobic005G110511 Sobic005G110511 Sobic002G081850--Sobic005G110511 Sobic005G066500 Sobic005G066500 Sobic002G081850--Sobic005G066500 Sobic002G081850--Sobic005G066300 Sobic002G081800 Sobic002G081800 Sobic002G081850--Sobic002G081800 Sobic002G081850--Sobic002G411000 Sobic002G081850--Sobic004G312500 Sobic005G065700 Sobic005G065700 Sobic002G081850--Sobic005G065700 Sobic005G022500--Sobic001G506600 Sobic005G219700 Sobic005G219700 Sobic005G022500--Sobic005G219700 Sobic005G022500--Sobic001G002800 Sobic005G022500--Sobic001G503000 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic005G022500--Sobic007G172500 Sobic005G022500--Sobic002G376100 Sobic002G254900--Sobic001G002800 Sobic002G254900--Sobic010G096700 Sobic010G180100 Sobic010G180100 Sobic002G254900--Sobic010G180100 Sobic004G047600 Sobic004G047600 Sobic002G254900--Sobic004G047600 Sobic001G360700 Sobic001G360700 Sobic002G254900--Sobic001G360700 Sobic002G254900--Sobic001G503000 Sobic002G254900--Sobic001G506600 Sobic002G254900--Sobic007G090472 Sobic002G167600 Sobic002G167600 Sobic002G254900--Sobic002G167600 Sobic002G259100 Sobic002G259100 Sobic003G287450--Sobic002G259100 Sobic003G287450--Sobic001G503000 Sobic005G115300 Sobic005G115300 Sobic003G287450--Sobic005G115300 Sobic004G312200 Sobic004G312200 Sobic003G287450--Sobic004G312200 Sobic003G287450--Sobic006G009700 Sobic003G287450--Sobic005G071900 Sobic001G218500 Sobic001G218500 Sobic003G287450--Sobic001G218500 Sobic003G287450--Sobic004G312500 Sobic003G287400 Sobic003G287400 Sobic003G287450--Sobic003G287400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.