Gene annotation
Transcriptome id Sobic.009G073100.1
Synonym ATIRT3, Sb09g006150, IRT3
Functional annotation metal cation transporter, putative, expressed
UniProt C5YUE6
Pfam PF02535
Panther DB PTHR11040 PTHR11040:SF52
NCBI CDD KOG1558; Fe2+/Zn2+ regulated transporter
KEGG Orthology K14709; SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G10970 : zinc transporter 4 precursor
RAP-DB (Rice) LOC_Os05g10940.1 : metal cation transporter, putative, expressed
MaizeGDB (Corn) Zm00025a043162
Brachypodium KQK07110 , KQK07109 , KQK07108
Barley -
Wheat TraesCS1D02G128000
Populus -


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cDNA sequences
Sobic.009G073100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
2 Sobic.004G055500 inositol-1-monophosphatase, putative, expressed K01092: E3.1.3.25, IMPA, myo-inositol-1(or 4)-monophosphatase
3 Sobic.002G083200 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
4 Sobic.005G084800 expressed protein -
5 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
6 Sobic.001G531400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
7 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
8 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
9 Sobic.002G128900 thioesterase family protein, putative, expressed -
10 Sobic.004G228200 thioredoxin, putative, expressed K03671: thioredoxin 1
11 Sobic.001G486700 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
12 Sobic.005G199400 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
13 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
14 Sobic.006G177800 Prolyl oligopeptidase family protein("PubMedID : 26759170,PubMedID : 24597475")@OsPOP9 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
15 Sobic.008G183700 cbbY protein-related, putative, expressed -
16 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
17 Sobic.004G193600 - -
18 Sobic.001G277900 expressed protein -
19 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.001G003100 T-complex protein, putative, expressed -


Gene co-expression network
sample Sobic009G073100 Sobic009G073100 Sobic007G208300 Sobic007G208300 Sobic009G073100--Sobic007G208300 Sobic004G055500 Sobic004G055500 Sobic009G073100--Sobic004G055500 Sobic002G083200 Sobic002G083200 Sobic009G073100--Sobic002G083200 Sobic005G084800 Sobic005G084800 Sobic009G073100--Sobic005G084800 Sobic010G052300 Sobic010G052300 Sobic009G073100--Sobic010G052300 Sobic001G531400 Sobic001G531400 Sobic009G073100--Sobic001G531400 Sobic004G301200 Sobic004G301200 Sobic009G073100--Sobic004G301200 Sobic001G295300 Sobic001G295300 Sobic009G073100--Sobic001G295300 Sobic002G128900 Sobic002G128900 Sobic009G073100--Sobic002G128900 Sobic007G208300--Sobic001G531400 Sobic001G291900 Sobic001G291900 Sobic007G208300--Sobic001G291900 Sobic003G085000 Sobic003G085000 Sobic007G208300--Sobic003G085000 Sobic004G336000 Sobic004G336000 Sobic007G208300--Sobic004G336000 Sobic007G208300--Sobic004G301200 Sobic007G208300--Sobic001G295300 Sobic001G104800 Sobic001G104800 Sobic007G208300--Sobic001G104800 Sobic006G132000 Sobic006G132000 Sobic007G208300--Sobic006G132000 Sobic007G208300--Sobic004G055500 Sobic004G055500--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic004G055500--Sobic006G106400 Sobic006G091300 Sobic006G091300 Sobic004G055500--Sobic006G091300 Sobic004G055500--Sobic001G531400 Sobic004G055500--Sobic003G085000 Sobic002G304100 Sobic002G304100 Sobic004G055500--Sobic002G304100 Sobic004G055500--Sobic007G208300 Sobic004G055500--Sobic004G301200 Sobic004G055500--Sobic004G336000 Sobic010G265500 Sobic010G265500 Sobic002G083200--Sobic010G265500 Sobic002G083200--Sobic009G073100 Sobic003G125400 Sobic003G125400 Sobic002G083200--Sobic003G125400 Sobic010G208700 Sobic010G208700 Sobic002G083200--Sobic010G208700 Sobic010G080300 Sobic010G080300 Sobic002G083200--Sobic010G080300 Sobic010G199000 Sobic010G199000 Sobic002G083200--Sobic010G199000 Sobic004G193600 Sobic004G193600 Sobic002G083200--Sobic004G193600 Sobic006G177800 Sobic006G177800 Sobic002G083200--Sobic006G177800 Sobic002G424100 Sobic002G424100 Sobic002G083200--Sobic002G424100 Sobic004G238200 Sobic004G238200 Sobic005G084800--Sobic004G238200 Sobic004G163800 Sobic004G163800 Sobic005G084800--Sobic004G163800 Sobic005G199400 Sobic005G199400 Sobic005G084800--Sobic005G199400 Sobic003G355900 Sobic003G355900 Sobic005G084800--Sobic003G355900 Sobic003G369400 Sobic003G369400 Sobic005G084800--Sobic003G369400 Sobic005G084500 Sobic005G084500 Sobic005G084800--Sobic005G084500 Sobic003G176000 Sobic003G176000 Sobic005G084800--Sobic003G176000 Sobic002G218500 Sobic002G218500 Sobic005G084800--Sobic002G218500 Sobic010G236300 Sobic010G236300 Sobic005G084800--Sobic010G236300 Sobic003G234101 Sobic003G234101 Sobic010G052300--Sobic003G234101 Sobic007G075700 Sobic007G075700 Sobic010G052300--Sobic007G075700 Sobic010G171300 Sobic010G171300 Sobic010G052300--Sobic010G171300 Sobic004G052401 Sobic004G052401 Sobic010G052300--Sobic004G052401 Sobic006G161900 Sobic006G161900 Sobic010G052300--Sobic006G161900 Sobic010G052300--Sobic009G073100 Sobic010G240500 Sobic010G240500 Sobic010G052300--Sobic010G240500 Sobic009G200400 Sobic009G200400 Sobic010G052300--Sobic009G200400 Sobic001G343400 Sobic001G343400 Sobic010G052300--Sobic001G343400 Sobic001G531400--Sobic001G291900 Sobic001G531400--Sobic003G085000 Sobic001G531400--Sobic007G208300 Sobic007G090400 Sobic007G090400 Sobic001G531400--Sobic007G090400 Sobic001G531400--Sobic004G336000 Sobic001G531400--Sobic006G106400 Sobic001G122400 Sobic001G122400 Sobic001G531400--Sobic001G122400 Sobic001G531400--Sobic001G104800 Sobic006G055800 Sobic006G055800 Sobic001G531400--Sobic006G055800 Sobic004G301200--Sobic007G208300 Sobic004G301200--Sobic006G091300 Sobic004G301200--Sobic004G055500 Sobic004G144400 Sobic004G144400 Sobic004G301200--Sobic004G144400 Sobic004G301200--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic004G301200--Sobic001G424300 Sobic004G301200--Sobic002G424100 Sobic003G162900 Sobic003G162900 Sobic004G301200--Sobic003G162900 Sobic003G267500 Sobic003G267500 Sobic004G301200--Sobic003G267500 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G295300--Sobic001G104800 Sobic010G140600 Sobic010G140600 Sobic002G128900--Sobic010G140600 Sobic002G279700 Sobic002G279700 Sobic002G128900--Sobic002G279700 Sobic002G128900--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G128900--Sobic002G200900 Sobic004G281900 Sobic004G281900 Sobic002G128900--Sobic004G281900 Sobic002G072400 Sobic002G072400 Sobic002G128900--Sobic002G072400 Sobic008G096800 Sobic008G096800 Sobic002G128900--Sobic008G096800 Sobic010G269400 Sobic010G269400 Sobic002G128900--Sobic010G269400 Sobic008G144800 Sobic008G144800 Sobic002G128900--Sobic008G144800
Octagon: transcription factors


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