Gene annotation
Transcriptome id Sobic.002G083200.2,Sobic.002G083200.3
Synonym Sb02g006960, ZIP3
Functional annotation metal cation transporter, putative, expressed
UniProt C5XDI4
Pfam PF02535
Panther DB PTHR11040 PTHR11040:SF35
NCBI CDD KOG1558; Fe2+/Zn2+ regulated transporter
KEGG Orthology K14709; SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G12750 : zinc transporter 1 precursor
RAP-DB (Rice) LOC_Os07g12890.2 : metal cation transporter, putative, expressed
MaizeGDB (Corn) Zm00025a043952 , Zm00025a045451 , Zm00025a009177 , Zm00025a045448
Brachypodium KQK05794 , KQK20303
Barley HORVU2Hr1G112230.7 , HORVU2Hr1G112230.5 , HORVU2Hr1G112230.4 , HORVU2Hr1G112230.3 , HORVU2Hr1G112230.2 , HORVU2Hr1G112230.1 , HORVU2Hr1G025400.1 , HORVU2Hr1G025400.3 , HORVU2Hr1G025400.2 , HORVU5Hr1G045570.2 , HORVU5Hr1G045570.1
Wheat TraesCS1B02G306500 , TraesCS2A02G143400 , TraesCS2D02G506200 , TraesCS1D02G293900 , TraesCS2D02G506300 , TraesCS2D02G146800 , TraesCS2A02G505500 , TraesCS2B02G533800 , TraesCS2B02G168400 , TraesCS1A02G297500
Populus -


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cDNA sequences
Sobic.002G083200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G265500 expressed protein -
2 Sobic.009G073100 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
3 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
4 Sobic.010G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
5 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
6 Sobic.010G199000 bZIP transcription factor domain containing protein, expressed -
7 Sobic.004G193600 - -
8 Sobic.006G177800 Prolyl oligopeptidase family protein("PubMedID : 26759170,PubMedID : 24597475")@OsPOP9 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
9 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
10 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
11 Sobic.003G110100 cysteine synthase, mitochondrial precursor, putative, expressed K01738: cysteine synthase
12 Sobic.002G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
13 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
15 Sobic.007G123800 DUF581 domain containing protein, expressed -
16 Sobic.005G021600 expressed protein -
17 Sobic.010G198000 tryptophan synthase beta chain 2, putative, expressed K06001: tryptophan synthase beta chain
18 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
19 Sobic.002G303300 anthranilate phosphoribosyltransferase, putative, expressed -
20 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic002G083200 Sobic002G083200 Sobic010G265500 Sobic010G265500 Sobic002G083200--Sobic010G265500 Sobic009G073100 Sobic009G073100 Sobic002G083200--Sobic009G073100 Sobic003G125400 Sobic003G125400 Sobic002G083200--Sobic003G125400 Sobic010G208700 Sobic010G208700 Sobic002G083200--Sobic010G208700 Sobic010G080300 Sobic010G080300 Sobic002G083200--Sobic010G080300 Sobic010G199000 Sobic010G199000 Sobic002G083200--Sobic010G199000 Sobic004G193600 Sobic004G193600 Sobic002G083200--Sobic004G193600 Sobic006G177800 Sobic006G177800 Sobic002G083200--Sobic006G177800 Sobic002G424100 Sobic002G424100 Sobic002G083200--Sobic002G424100 Sobic005G021600 Sobic005G021600 Sobic010G265500--Sobic005G021600 Sobic003G187000 Sobic003G187000 Sobic010G265500--Sobic003G187000 Sobic004G343100 Sobic004G343100 Sobic010G265500--Sobic004G343100 Sobic010G218600 Sobic010G218600 Sobic010G265500--Sobic010G218600 Sobic007G178500 Sobic007G178500 Sobic010G265500--Sobic007G178500 Sobic009G028400 Sobic009G028400 Sobic010G265500--Sobic009G028400 Sobic001G498300 Sobic001G498300 Sobic010G265500--Sobic001G498300 Sobic008G063100 Sobic008G063100 Sobic010G265500--Sobic008G063100 Sobic001G447700 Sobic001G447700 Sobic010G265500--Sobic001G447700 Sobic007G208300 Sobic007G208300 Sobic009G073100--Sobic007G208300 Sobic004G055500 Sobic004G055500 Sobic009G073100--Sobic004G055500 Sobic009G073100--Sobic002G083200 Sobic005G084800 Sobic005G084800 Sobic009G073100--Sobic005G084800 Sobic010G052300 Sobic010G052300 Sobic009G073100--Sobic010G052300 Sobic001G531400 Sobic001G531400 Sobic009G073100--Sobic001G531400 Sobic004G301200 Sobic004G301200 Sobic009G073100--Sobic004G301200 Sobic001G295300 Sobic001G295300 Sobic009G073100--Sobic001G295300 Sobic002G128900 Sobic002G128900 Sobic009G073100--Sobic002G128900 Sobic008G144800 Sobic008G144800 Sobic003G125400--Sobic008G144800 Sobic006G110900 Sobic006G110900 Sobic003G125400--Sobic006G110900 Sobic003G125400--Sobic002G424100 Sobic008G063200 Sobic008G063200 Sobic003G125400--Sobic008G063200 Sobic002G246500 Sobic002G246500 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic010G140600 Sobic010G140600 Sobic003G125400--Sobic010G140600 Sobic003G343400 Sobic003G343400 Sobic003G125400--Sobic003G343400 Sobic003G125400--Sobic010G080300 Sobic004G224500 Sobic004G224500 Sobic010G208700--Sobic004G224500 Sobic006G024500 Sobic006G024500 Sobic010G208700--Sobic006G024500 Sobic010G208700--Sobic003G125400 Sobic010G208700--Sobic002G083200 Sobic004G142800 Sobic004G142800 Sobic010G208700--Sobic004G142800 Sobic006G197700 Sobic006G197700 Sobic010G208700--Sobic006G197700 Sobic010G208700--Sobic002G424100 Sobic010G208700--Sobic005G021600 Sobic003G110100 Sobic003G110100 Sobic010G208700--Sobic003G110100 Sobic002G281800 Sobic002G281800 Sobic010G080300--Sobic002G281800 Sobic008G193300 Sobic008G193300 Sobic010G080300--Sobic008G193300 Sobic010G080300--Sobic003G125400 Sobic007G046500 Sobic007G046500 Sobic010G080300--Sobic007G046500 Sobic010G080300--Sobic008G063200 Sobic010G080300--Sobic008G144800 Sobic005G072200 Sobic005G072200 Sobic010G080300--Sobic005G072200 Sobic007G029100 Sobic007G029100 Sobic010G080300--Sobic007G029100 Sobic010G080300--Sobic003G310100 Sobic001G221300 Sobic001G221300 Sobic010G199000--Sobic001G221300 Sobic010G199000--Sobic010G265500 Sobic010G199000--Sobic004G343100 Sobic010G199000--Sobic001G295300 Sobic003G022300 Sobic003G022300 Sobic010G199000--Sobic003G022300 Sobic003G008900 Sobic003G008900 Sobic010G199000--Sobic003G008900 Sobic004G280100 Sobic004G280100 Sobic010G199000--Sobic004G280100 Sobic010G199000--Sobic003G187000 Sobic001G308800 Sobic001G308800 Sobic010G199000--Sobic001G308800 Sobic004G193600--Sobic003G110100 Sobic009G124000 Sobic009G124000 Sobic004G193600--Sobic009G124000 Sobic004G193600--Sobic004G301200 Sobic006G161900 Sobic006G161900 Sobic004G193600--Sobic006G161900 Sobic004G193600--Sobic002G083200 Sobic001G067300 Sobic001G067300 Sobic004G193600--Sobic001G067300 Sobic004G193600--Sobic010G052300 Sobic004G193600--Sobic009G073100 Sobic004G144400 Sobic004G144400 Sobic004G193600--Sobic004G144400 Sobic007G125500 Sobic007G125500 Sobic006G177800--Sobic007G125500 Sobic003G306700 Sobic003G306700 Sobic006G177800--Sobic003G306700 Sobic010G240500 Sobic010G240500 Sobic006G177800--Sobic010G240500 Sobic006G177800--Sobic002G083200 Sobic008G089500 Sobic008G089500 Sobic006G177800--Sobic008G089500 Sobic008G119300 Sobic008G119300 Sobic006G177800--Sobic008G119300 Sobic006G177800--Sobic009G073100 Sobic006G111600 Sobic006G111600 Sobic006G177800--Sobic006G111600 Sobic006G155500 Sobic006G155500 Sobic006G177800--Sobic006G155500 Sobic003G085000 Sobic003G085000 Sobic002G424100--Sobic003G085000 Sobic005G002900 Sobic005G002900 Sobic002G424100--Sobic005G002900 Sobic002G056800 Sobic002G056800 Sobic002G424100--Sobic002G056800 Sobic002G131700 Sobic002G131700 Sobic002G424100--Sobic002G131700 Sobic002G424100--Sobic003G310100 Sobic002G424100--Sobic006G111600 Sobic002G424100--Sobic001G531400 Sobic002G424100--Sobic009G028400 Sobic001G291900 Sobic001G291900 Sobic002G424100--Sobic001G291900
Octagon: transcription factors


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