Gene annotation
Transcriptome id Sobic.002G121300.1
Synonym SCPL19, SNG2, Sb02g010510
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed
UniProt C5X515
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF46
NCBI CDD KOG1282; Serine carboxypeptidases (lysosomal cathepsin A)
KEGG Orthology K16296; serine carboxypeptidase-like clade I
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT5G09640 : serine carboxypeptidase-like 19
RAP-DB (Rice) LOC_Os11g24510.1 : OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a045808
Brachypodium PNT63840 , PNT63837 , KQK13387 , KQK08312
Barley HORVU3Hr1G078300.5 , HORVU3Hr1G078300.4 , HORVU3Hr1G078300.7 , HORVU3Hr1G078300.6 , HORVU3Hr1G078300.1 , HORVU3Hr1G078300.3 , HORVU3Hr1G078300.2 , HORVU3Hr1G078300.9 , HORVU3Hr1G078300.8 , HORVU2Hr1G097230.3 , HORVU2Hr1G097230.1 , HORVU3Hr1G078300.11 , HORVU3Hr1G078300.10 , HORVU3Hr1G078300.13 , HORVU3Hr1G078300.12
Wheat TraesCS3D02G322700 , TraesCS2D02G409500 , TraesCS1B02G416700 , TraesCS1B02G416700 , TraesCS2A02G412400 , TraesCS2A02G412400 , TraesCS2D02G409600 , TraesCS2D02G409600 , TraesCS2D02G409800 , TraesCS2D02G409800 , TraesCS2A02G412300 , TraesCS2A02G412500 , TraesCS3A02G329200 , TraesCS2B02G430900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G260900 methyltransferase, putative, expressed -
2 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
3 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
4 Sobic.004G228200 thioredoxin, putative, expressed K03671: thioredoxin 1
5 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
6 Sobic.006G145500 Beta-glucosidase 16 (Precursor)(PubMedID : 26186930)@Os4bglu16 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
7 Sobic.008G090900 expressed protein -
8 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
9 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
10 Sobic.001G447700 expressed protein -
11 Sobic.001G291900 expressed protein -
12 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
13 Sobic.009G033200 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
15 Sobic.006G044400 OsSCP23 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
16 Sobic.002G083200 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
17 Sobic.001G531400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
18 Sobic.002G056800 YGGT family protein, putative, expressed -
19 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
20 Sobic.002G378000 amidase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G121300 Sobic002G121300 Sobic003G260900 Sobic003G260900 Sobic002G121300--Sobic003G260900 Sobic001G295300 Sobic001G295300 Sobic002G121300--Sobic001G295300 Sobic003G085000 Sobic003G085000 Sobic002G121300--Sobic003G085000 Sobic004G228200 Sobic004G228200 Sobic002G121300--Sobic004G228200 Sobic007G208300 Sobic007G208300 Sobic002G121300--Sobic007G208300 Sobic006G145500 Sobic006G145500 Sobic002G121300--Sobic006G145500 Sobic008G090900 Sobic008G090900 Sobic002G121300--Sobic008G090900 Sobic008G067100 Sobic008G067100 Sobic002G121300--Sobic008G067100 Sobic009G093900 Sobic009G093900 Sobic002G121300--Sobic009G093900 Sobic009G155600 Sobic009G155600 Sobic003G260900--Sobic009G155600 Sobic001G513800 Sobic001G513800 Sobic003G260900--Sobic001G513800 Sobic003G260900--Sobic002G121300 Sobic008G021200 Sobic008G021200 Sobic003G260900--Sobic008G021200 Sobic003G260900--Sobic007G208300 Sobic008G095400 Sobic008G095400 Sobic003G260900--Sobic008G095400 Sobic001G025800 Sobic001G025800 Sobic003G260900--Sobic001G025800 Sobic005G117300 Sobic005G117300 Sobic003G260900--Sobic005G117300 Sobic003G260900--Sobic008G090900 Sobic001G291900 Sobic001G291900 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic003G085000--Sobic001G291900 Sobic006G055800 Sobic006G055800 Sobic003G085000--Sobic006G055800 Sobic010G255100 Sobic010G255100 Sobic003G085000--Sobic010G255100 Sobic004G336000 Sobic004G336000 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic005G002900 Sobic005G002900 Sobic003G085000--Sobic005G002900 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic004G228200--Sobic001G295300 Sobic004G228200--Sobic001G291900 Sobic004G228200--Sobic003G085000 Sobic004G228200--Sobic006G256600 Sobic004G228200--Sobic001G447700 Sobic004G228200--Sobic010G255100 Sobic004G228200--Sobic007G208300 Sobic004G228200--Sobic001G531400 Sobic003G343400 Sobic003G343400 Sobic004G228200--Sobic003G343400 Sobic007G208300--Sobic001G531400 Sobic007G208300--Sobic001G291900 Sobic007G208300--Sobic003G085000 Sobic007G208300--Sobic004G336000 Sobic004G301200 Sobic004G301200 Sobic007G208300--Sobic004G301200 Sobic007G208300--Sobic001G295300 Sobic007G208300--Sobic001G104800 Sobic006G132000 Sobic006G132000 Sobic007G208300--Sobic006G132000 Sobic004G055500 Sobic004G055500 Sobic007G208300--Sobic004G055500 Sobic004G036100 Sobic004G036100 Sobic006G145500--Sobic004G036100 Sobic003G383600 Sobic003G383600 Sobic006G145500--Sobic003G383600 Sobic007G170800 Sobic007G170800 Sobic006G145500--Sobic007G170800 Sobic004G044200 Sobic004G044200 Sobic006G145500--Sobic004G044200 Sobic004G038300 Sobic004G038300 Sobic006G145500--Sobic004G038300 Sobic008G163200 Sobic008G163200 Sobic006G145500--Sobic008G163200 Sobic001G255300 Sobic001G255300 Sobic006G145500--Sobic001G255300 Sobic009G001500 Sobic009G001500 Sobic006G145500--Sobic009G001500 Sobic003G068300 Sobic003G068300 Sobic006G145500--Sobic003G068300 Sobic004G003900 Sobic004G003900 Sobic008G090900--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic008G090900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic008G090900--Sobic002G181132 Sobic001G382800 Sobic001G382800 Sobic008G090900--Sobic001G382800 Sobic008G090900--Sobic008G067100 Sobic003G045300 Sobic003G045300 Sobic008G090900--Sobic003G045300 Sobic001G375000 Sobic001G375000 Sobic008G090900--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic008G090900--Sobic003G128400 Sobic006G088000 Sobic006G088000 Sobic008G090900--Sobic006G088000 Sobic008G067100--Sobic008G090900 Sobic007G095500 Sobic007G095500 Sobic008G067100--Sobic007G095500 Sobic004G144400 Sobic004G144400 Sobic008G067100--Sobic004G144400 Sobic002G156100 Sobic002G156100 Sobic008G067100--Sobic002G156100 Sobic008G067100--Sobic001G382800 Sobic008G067100--Sobic004G003900 Sobic008G067100--Sobic003G128400 Sobic004G208600 Sobic004G208600 Sobic008G067100--Sobic004G208600 Sobic002G378000 Sobic002G378000 Sobic008G067100--Sobic002G378000 Sobic002G431300 Sobic002G431300 Sobic009G093900--Sobic002G431300 Sobic009G093900--Sobic006G055800 Sobic009G168600 Sobic009G168600 Sobic009G093900--Sobic009G168600 Sobic006G186600 Sobic006G186600 Sobic009G093900--Sobic006G186600 Sobic008G089500 Sobic008G089500 Sobic009G093900--Sobic008G089500 Sobic006G128300 Sobic006G128300 Sobic009G093900--Sobic006G128300 Sobic009G093900--Sobic004G144400 Sobic004G016400 Sobic004G016400 Sobic009G093900--Sobic004G016400 Sobic009G093900--Sobic004G336000
Octagon: transcription factors


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