Gene annotation
Transcriptome id Sobic.010G208700.1
Synonym Sb10g025550
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
UniProt A0A194YKL0
Pfam PF05577
Panther DB PTHR11010 PTHR11010:SF31
NCBI CDD -
KEGG Orthology K01285; lysosomal Pro-X carboxypeptidase
Gene Ontology GO:0008236; serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT2G24280 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g43930.1 : OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a042054 , Zm00025a051600
Brachypodium KQK16822
Barley HORVU6Hr1G084920.1 , HORVU1Hr1G008670.1
Wheat TraesCS7D02G499500 , TraesCS7D02G499300 , TraesCS7A02G510000 , TraesCS7B02G420100 , TraesCS7D02G499400 , TraesCS7B02G420500 , TraesCS7B02G420600 , TraesCS7B02G420400 , TraesCS7B02G419900 , TraesCS7B02G419800 , TraesCS7B02G420700 , TraesCS7D02G499200 , TraesCS7A02G509900 , TraesCS7A02G510200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
3 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
4 Sobic.002G083200 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
5 Sobic.004G142800 similar to Cysteine proteinase 1 precursor(PubMedID : 29862293)@"As a homologous gene of the drought stress-responsive gene RD19 of Arabidopsis, SbRD19 overexpression in Arabidopsis improved the drought tolerance of plants relative to wild-type plants."(PubMedID : 32112957)@cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
6 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
7 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
8 Sobic.005G021600 expressed protein -
9 Sobic.003G110100 cysteine synthase, mitochondrial precursor, putative, expressed K01738: cysteine synthase
10 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
11 Sobic.002G163700 expressed protein -
12 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
13 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
14 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
15 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.006G214700 APO, putative, expressed -
17 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
18 Sobic.004G265900 class I glutamine amidotransferase, putative, expressed K01956: carA, carbamoyl-phosphate synthase small subunit
19 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
20 Sobic.010G198000 tryptophan synthase beta chain 2, putative, expressed K06001: tryptophan synthase beta chain


Gene co-expression network
sample Sobic010G208700 Sobic010G208700 Sobic004G224500 Sobic004G224500 Sobic010G208700--Sobic004G224500 Sobic006G024500 Sobic006G024500 Sobic010G208700--Sobic006G024500 Sobic003G125400 Sobic003G125400 Sobic010G208700--Sobic003G125400 Sobic002G083200 Sobic002G083200 Sobic010G208700--Sobic002G083200 Sobic004G142800 Sobic004G142800 Sobic010G208700--Sobic004G142800 Sobic006G197700 Sobic006G197700 Sobic010G208700--Sobic006G197700 Sobic002G424100 Sobic002G424100 Sobic010G208700--Sobic002G424100 Sobic005G021600 Sobic005G021600 Sobic010G208700--Sobic005G021600 Sobic003G110100 Sobic003G110100 Sobic010G208700--Sobic003G110100 Sobic006G110900 Sobic006G110900 Sobic004G224500--Sobic006G110900 Sobic002G046900 Sobic002G046900 Sobic004G224500--Sobic002G046900 Sobic004G224500--Sobic005G021600 Sobic006G214700 Sobic006G214700 Sobic004G224500--Sobic006G214700 Sobic001G525900 Sobic001G525900 Sobic004G224500--Sobic001G525900 Sobic008G063200 Sobic008G063200 Sobic004G224500--Sobic008G063200 Sobic003G179400 Sobic003G179400 Sobic004G224500--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic004G224500--Sobic001G006000 Sobic001G314900 Sobic001G314900 Sobic004G224500--Sobic001G314900 Sobic005G028900 Sobic005G028900 Sobic006G024500--Sobic005G028900 Sobic006G024500--Sobic004G142800 Sobic009G036300 Sobic009G036300 Sobic006G024500--Sobic009G036300 Sobic006G024500--Sobic003G125400 Sobic010G231100 Sobic010G231100 Sobic006G024500--Sobic010G231100 Sobic001G450600 Sobic001G450600 Sobic006G024500--Sobic001G450600 Sobic009G213800 Sobic009G213800 Sobic006G024500--Sobic009G213800 Sobic007G227600 Sobic007G227600 Sobic006G024500--Sobic007G227600 Sobic003G103200 Sobic003G103200 Sobic006G024500--Sobic003G103200 Sobic008G144800 Sobic008G144800 Sobic003G125400--Sobic008G144800 Sobic003G125400--Sobic006G110900 Sobic003G125400--Sobic002G424100 Sobic003G125400--Sobic008G063200 Sobic002G246500 Sobic002G246500 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic010G140600 Sobic010G140600 Sobic003G125400--Sobic010G140600 Sobic003G343400 Sobic003G343400 Sobic003G125400--Sobic003G343400 Sobic010G080300 Sobic010G080300 Sobic003G125400--Sobic010G080300 Sobic010G265500 Sobic010G265500 Sobic002G083200--Sobic010G265500 Sobic009G073100 Sobic009G073100 Sobic002G083200--Sobic009G073100 Sobic002G083200--Sobic003G125400 Sobic002G083200--Sobic010G208700 Sobic002G083200--Sobic010G080300 Sobic010G199000 Sobic010G199000 Sobic002G083200--Sobic010G199000 Sobic004G193600 Sobic004G193600 Sobic002G083200--Sobic004G193600 Sobic006G177800 Sobic006G177800 Sobic002G083200--Sobic006G177800 Sobic002G083200--Sobic002G424100 Sobic004G142800--Sobic006G024500 Sobic002G217200 Sobic002G217200 Sobic004G142800--Sobic002G217200 Sobic004G142800--Sobic009G213800 Sobic007G073700 Sobic007G073700 Sobic004G142800--Sobic007G073700 Sobic005G064800 Sobic005G064800 Sobic004G142800--Sobic005G064800 Sobic006G201100 Sobic006G201100 Sobic004G142800--Sobic006G201100 Sobic004G131040 Sobic004G131040 Sobic004G142800--Sobic004G131040 Sobic004G142800--Sobic010G231100 Sobic004G142800--Sobic010G208700 Sobic003G245800 Sobic003G245800 Sobic006G197700--Sobic003G245800 Sobic002G345200 Sobic002G345200 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic003G439600 Sobic003G439600 Sobic006G197700--Sobic003G439600 Sobic003G330100 Sobic003G330100 Sobic006G197700--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G197700--Sobic003G221700 Sobic002G386400 Sobic002G386400 Sobic006G197700--Sobic002G386400 Sobic002G163700 Sobic002G163700 Sobic006G197700--Sobic002G163700 Sobic003G085000 Sobic003G085000 Sobic002G424100--Sobic003G085000 Sobic005G002900 Sobic005G002900 Sobic002G424100--Sobic005G002900 Sobic002G056800 Sobic002G056800 Sobic002G424100--Sobic002G056800 Sobic002G131700 Sobic002G131700 Sobic002G424100--Sobic002G131700 Sobic002G424100--Sobic003G310100 Sobic002G424100--Sobic006G111600 Sobic001G531400 Sobic001G531400 Sobic002G424100--Sobic001G531400 Sobic009G028400 Sobic009G028400 Sobic002G424100--Sobic009G028400 Sobic001G291900 Sobic001G291900 Sobic002G424100--Sobic001G291900 Sobic008G063100 Sobic008G063100 Sobic005G021600--Sobic008G063100 Sobic005G021600--Sobic010G265500 Sobic005G021600--Sobic009G028400 Sobic002G195700 Sobic002G195700 Sobic005G021600--Sobic002G195700 Sobic007G178500 Sobic007G178500 Sobic005G021600--Sobic007G178500 Sobic010G218600 Sobic010G218600 Sobic005G021600--Sobic010G218600 Sobic002G281000 Sobic002G281000 Sobic005G021600--Sobic002G281000 Sobic005G021600--Sobic007G132500 Sobic005G021600--Sobic001G006000 Sobic004G265900 Sobic004G265900 Sobic003G110100--Sobic004G265900 Sobic001G400300 Sobic001G400300 Sobic003G110100--Sobic001G400300 Sobic003G110100--Sobic003G330100 Sobic003G110100--Sobic006G111600 Sobic003G110100--Sobic003G221700 Sobic003G191000 Sobic003G191000 Sobic003G110100--Sobic003G191000 Sobic003G110100--Sobic002G345200 Sobic007G162300 Sobic007G162300 Sobic003G110100--Sobic007G162300 Sobic003G110100--Sobic004G193600
Octagon: transcription factors


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