Gene annotation
Transcriptome id Sobic.006G024500.3,Sobic.006G024500.4,Sobic.006G024500.2,Sobic.006G024500.1
Synonym CDCP1, LEJ1, Sb06g002220
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CBS domain containing membrane protein, putative, expressed
UniProt A0A1B6PJM0 , A0A1B6PJL8 , A0A1B6PJN8
Pfam PF00571
Panther DB PTHR11911:SF93 PTHR11911 PTHR11911 PTHR11911:SF93
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34120 : Cystathionine beta-synthase (CBS) family protein
RAP-DB (Rice) LOC_Os09g02710.1 : CBS domain containing membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a012429
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G024500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
2 Sobic.004G142800 similar to Cysteine proteinase 1 precursor(PubMedID : 29862293)@"As a homologous gene of the drought stress-responsive gene RD19 of Arabidopsis, SbRD19 overexpression in Arabidopsis improved the drought tolerance of plants relative to wild-type plants."(PubMedID : 32112957)@cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
3 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
4 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
5 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
6 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
7 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
8 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
10 Sobic.006G214700 APO, putative, expressed -
11 Sobic.004G144000 - -
12 Sobic.002G163700 expressed protein -
13 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
14 Sobic.002G217200 oryzain gamma chain precursor, putative, expressed K01366: cathepsin H
15 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
16 Sobic.003G356100 CRR2, putative, expressed -
17 Sobic.009G141400 transcriptional regulator, putative, expressed -
18 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
19 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
20 Sobic.004G333400 COBW domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G024500 Sobic006G024500 Sobic005G028900 Sobic005G028900 Sobic006G024500--Sobic005G028900 Sobic004G142800 Sobic004G142800 Sobic006G024500--Sobic004G142800 Sobic009G036300 Sobic009G036300 Sobic006G024500--Sobic009G036300 Sobic003G125400 Sobic003G125400 Sobic006G024500--Sobic003G125400 Sobic010G231100 Sobic010G231100 Sobic006G024500--Sobic010G231100 Sobic001G450600 Sobic001G450600 Sobic006G024500--Sobic001G450600 Sobic009G213800 Sobic009G213800 Sobic006G024500--Sobic009G213800 Sobic007G227600 Sobic007G227600 Sobic006G024500--Sobic007G227600 Sobic003G103200 Sobic003G103200 Sobic006G024500--Sobic003G103200 Sobic006G214700 Sobic006G214700 Sobic005G028900--Sobic006G214700 Sobic004G144000 Sobic004G144000 Sobic005G028900--Sobic004G144000 Sobic010G183400 Sobic010G183400 Sobic005G028900--Sobic010G183400 Sobic004G250200 Sobic004G250200 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic005G028900--Sobic007G227600 Sobic004G333400 Sobic004G333400 Sobic005G028900--Sobic004G333400 Sobic004G142800--Sobic006G024500 Sobic002G217200 Sobic002G217200 Sobic004G142800--Sobic002G217200 Sobic004G142800--Sobic009G213800 Sobic007G073700 Sobic007G073700 Sobic004G142800--Sobic007G073700 Sobic005G064800 Sobic005G064800 Sobic004G142800--Sobic005G064800 Sobic006G201100 Sobic006G201100 Sobic004G142800--Sobic006G201100 Sobic004G131040 Sobic004G131040 Sobic004G142800--Sobic004G131040 Sobic004G142800--Sobic010G231100 Sobic010G208700 Sobic010G208700 Sobic004G142800--Sobic010G208700 Sobic009G036300--Sobic007G227600 Sobic001G388400 Sobic001G388400 Sobic009G036300--Sobic001G388400 Sobic010G074200 Sobic010G074200 Sobic009G036300--Sobic010G074200 Sobic010G028000 Sobic010G028000 Sobic009G036300--Sobic010G028000 Sobic010G074100 Sobic010G074100 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G234200 Sobic009G234200 Sobic009G036300--Sobic009G234200 Sobic006G204100 Sobic006G204100 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic008G144800 Sobic008G144800 Sobic003G125400--Sobic008G144800 Sobic006G110900 Sobic006G110900 Sobic003G125400--Sobic006G110900 Sobic002G424100 Sobic002G424100 Sobic003G125400--Sobic002G424100 Sobic008G063200 Sobic008G063200 Sobic003G125400--Sobic008G063200 Sobic002G246500 Sobic002G246500 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic010G140600 Sobic010G140600 Sobic003G125400--Sobic010G140600 Sobic003G343400 Sobic003G343400 Sobic003G125400--Sobic003G343400 Sobic010G080300 Sobic010G080300 Sobic003G125400--Sobic010G080300 Sobic010G231100--Sobic003G179400 Sobic001G207200 Sobic001G207200 Sobic010G231100--Sobic001G207200 Sobic010G231100--Sobic006G214700 Sobic010G231100--Sobic005G028900 Sobic010G231100--Sobic009G036300 Sobic009G079950 Sobic009G079950 Sobic010G231100--Sobic009G079950 Sobic009G141400 Sobic009G141400 Sobic010G231100--Sobic009G141400 Sobic010G231100--Sobic006G024500 Sobic010G231100--Sobic001G450600 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic002G331800 Sobic002G331800 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic009G019100 Sobic009G019100 Sobic009G213800--Sobic009G019100 Sobic001G275500 Sobic001G275500 Sobic009G213800--Sobic001G275500 Sobic006G060601 Sobic006G060601 Sobic009G213800--Sobic006G060601 Sobic001G029200 Sobic001G029200 Sobic009G213800--Sobic001G029200 Sobic010G035500 Sobic010G035500 Sobic009G213800--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic009G213800--Sobic003G359500 Sobic009G213800--Sobic006G201100 Sobic002G046900 Sobic002G046900 Sobic009G213800--Sobic002G046900 Sobic004G300000 Sobic004G300000 Sobic009G213800--Sobic004G300000 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic009G190800 Sobic009G190800 Sobic003G103200--Sobic009G190800 Sobic002G137300 Sobic002G137300 Sobic003G103200--Sobic002G137300 Sobic003G103200--Sobic006G024500 Sobic008G081300 Sobic008G081300 Sobic003G103200--Sobic008G081300 Sobic005G044400 Sobic005G044400 Sobic003G103200--Sobic005G044400 Sobic008G193300 Sobic008G193300 Sobic003G103200--Sobic008G193300 Sobic003G103200--Sobic009G141400 Sobic002G181300 Sobic002G181300 Sobic003G103200--Sobic002G181300 Sobic003G103200--Sobic008G144800
Octagon: transcription factors


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