Gene annotation
Transcriptome id Sobic.004G142800.1
Synonym RD19,SbRD19, RD19A, Sb04g017830
Functional annotation similar to Cysteine proteinase 1 precursor (PubMedID : 29862293)
"As a homologous gene of the drought stress-responsive gene RD19 of Arabidopsis, SbRD19 overexpression in Arabidopsis improved the drought tolerance of plants relative to wild-type plants." (PubMedID : 32112957)
cysteine proteinase 1 precursor, putative, expressed
UniProt C5Y171
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF342
NCBI CDD KOG1542; Cysteine proteinase Cathepsin F
KEGG Orthology K01373; cathepsin F
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G39090 : Papain family cysteine protease
RAP-DB (Rice) LOC_Os02g27030.1 : cysteine proteinase 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a020268
Brachypodium KQJ99450
Barley HORVU4Hr1G082210.4 , HORVU4Hr1G082210.1 , HORVU4Hr1G082210.3 , HORVU4Hr1G082210.2 , HORVU7Hr1G074340.2 , HORVU7Hr1G074340.4 , HORVU7Hr1G074340.1 , HORVU7Hr1G074340.3 , HORVU7Hr1G069280.1 , HORVU5Hr1G082810.1
Wheat TraesCS5D02G332200 , TraesCS5B02G326500
Populus -


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cDNA sequences
Sobic.004G142800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
2 Sobic.002G217200 oryzain gamma chain precursor, putative, expressed K01366: cathepsin H
3 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
4 Sobic.007G073700 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
5 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
6 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
7 Sobic.004G131040 - K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
8 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.010G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
10 Sobic.001G029200 phosphoesterase family protein, putative, expressed K01114: phospholipase C
11 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
12 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
13 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
14 Sobic.004G265800 uridine kinase, putative, expressed -
15 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
16 Sobic.003G361900 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
17 Sobic.002G137300 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
18 Sobic.002G163700 expressed protein -
19 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
20 Sobic.007G227700 expressed protein -


Gene co-expression network
sample Sobic004G142800 Sobic004G142800 Sobic006G024500 Sobic006G024500 Sobic004G142800--Sobic006G024500 Sobic002G217200 Sobic002G217200 Sobic004G142800--Sobic002G217200 Sobic009G213800 Sobic009G213800 Sobic004G142800--Sobic009G213800 Sobic007G073700 Sobic007G073700 Sobic004G142800--Sobic007G073700 Sobic005G064800 Sobic005G064800 Sobic004G142800--Sobic005G064800 Sobic006G201100 Sobic006G201100 Sobic004G142800--Sobic006G201100 Sobic004G131040 Sobic004G131040 Sobic004G142800--Sobic004G131040 Sobic010G231100 Sobic010G231100 Sobic004G142800--Sobic010G231100 Sobic010G208700 Sobic010G208700 Sobic004G142800--Sobic010G208700 Sobic005G028900 Sobic005G028900 Sobic006G024500--Sobic005G028900 Sobic006G024500--Sobic004G142800 Sobic009G036300 Sobic009G036300 Sobic006G024500--Sobic009G036300 Sobic003G125400 Sobic003G125400 Sobic006G024500--Sobic003G125400 Sobic006G024500--Sobic010G231100 Sobic001G450600 Sobic001G450600 Sobic006G024500--Sobic001G450600 Sobic006G024500--Sobic009G213800 Sobic007G227600 Sobic007G227600 Sobic006G024500--Sobic007G227600 Sobic003G103200 Sobic003G103200 Sobic006G024500--Sobic003G103200 Sobic002G217200--Sobic004G142800 Sobic002G217200--Sobic006G024500 Sobic006G242000 Sobic006G242000 Sobic002G217200--Sobic006G242000 Sobic002G217200--Sobic004G131040 Sobic001G275500 Sobic001G275500 Sobic002G217200--Sobic001G275500 Sobic002G217200--Sobic009G213800 Sobic009G062800 Sobic009G062800 Sobic002G217200--Sobic009G062800 Sobic002G181300 Sobic002G181300 Sobic002G217200--Sobic002G181300 Sobic010G000600 Sobic010G000600 Sobic002G217200--Sobic010G000600 Sobic009G019100 Sobic009G019100 Sobic009G213800--Sobic009G019100 Sobic009G213800--Sobic001G275500 Sobic006G060601 Sobic006G060601 Sobic009G213800--Sobic006G060601 Sobic001G029200 Sobic001G029200 Sobic009G213800--Sobic001G029200 Sobic010G035500 Sobic010G035500 Sobic009G213800--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic009G213800--Sobic003G359500 Sobic009G213800--Sobic006G201100 Sobic002G046900 Sobic002G046900 Sobic009G213800--Sobic002G046900 Sobic004G300000 Sobic004G300000 Sobic009G213800--Sobic004G300000 Sobic004G190700 Sobic004G190700 Sobic007G073700--Sobic004G190700 Sobic007G073700--Sobic005G064800 Sobic007G029100 Sobic007G029100 Sobic007G073700--Sobic007G029100 Sobic007G073700--Sobic004G142800 Sobic007G073700--Sobic006G242000 Sobic006G127400 Sobic006G127400 Sobic007G073700--Sobic006G127400 Sobic009G029700 Sobic009G029700 Sobic007G073700--Sobic009G029700 Sobic007G073700--Sobic004G131040 Sobic004G174100 Sobic004G174100 Sobic007G073700--Sobic004G174100 Sobic004G202700 Sobic004G202700 Sobic005G064800--Sobic004G202700 Sobic005G064800--Sobic007G073700 Sobic005G064800--Sobic007G029100 Sobic009G190800 Sobic009G190800 Sobic005G064800--Sobic009G190800 Sobic005G064800--Sobic004G174100 Sobic005G064800--Sobic004G142800 Sobic001G416300 Sobic001G416300 Sobic005G064800--Sobic001G416300 Sobic005G064800--Sobic006G242000 Sobic002G339500 Sobic002G339500 Sobic005G064800--Sobic002G339500 Sobic006G201100--Sobic010G035500 Sobic006G214700 Sobic006G214700 Sobic006G201100--Sobic006G214700 Sobic006G201100--Sobic002G046900 Sobic010G207500 Sobic010G207500 Sobic006G201100--Sobic010G207500 Sobic006G201100--Sobic004G300000 Sobic006G110900 Sobic006G110900 Sobic006G201100--Sobic006G110900 Sobic003G306700 Sobic003G306700 Sobic006G201100--Sobic003G306700 Sobic004G164200 Sobic004G164200 Sobic006G201100--Sobic004G164200 Sobic009G141400 Sobic009G141400 Sobic006G201100--Sobic009G141400 Sobic004G131040--Sobic010G000600 Sobic004G265800 Sobic004G265800 Sobic004G131040--Sobic004G265800 Sobic004G131040--Sobic002G181300 Sobic001G146800 Sobic001G146800 Sobic004G131040--Sobic001G146800 Sobic002G315800 Sobic002G315800 Sobic004G131040--Sobic002G315800 Sobic006G030600 Sobic006G030600 Sobic004G131040--Sobic006G030600 Sobic007G004500 Sobic007G004500 Sobic004G131040--Sobic007G004500 Sobic002G193100 Sobic002G193100 Sobic004G131040--Sobic002G193100 Sobic003G110000 Sobic003G110000 Sobic004G131040--Sobic003G110000 Sobic003G179400 Sobic003G179400 Sobic010G231100--Sobic003G179400 Sobic001G207200 Sobic001G207200 Sobic010G231100--Sobic001G207200 Sobic010G231100--Sobic006G214700 Sobic010G231100--Sobic005G028900 Sobic010G231100--Sobic009G036300 Sobic009G079950 Sobic009G079950 Sobic010G231100--Sobic009G079950 Sobic010G231100--Sobic009G141400 Sobic010G231100--Sobic006G024500 Sobic010G231100--Sobic001G450600 Sobic004G224500 Sobic004G224500 Sobic010G208700--Sobic004G224500 Sobic010G208700--Sobic006G024500 Sobic010G208700--Sobic003G125400 Sobic002G083200 Sobic002G083200 Sobic010G208700--Sobic002G083200 Sobic010G208700--Sobic004G142800 Sobic006G197700 Sobic006G197700 Sobic010G208700--Sobic006G197700 Sobic002G424100 Sobic002G424100 Sobic010G208700--Sobic002G424100 Sobic005G021600 Sobic005G021600 Sobic010G208700--Sobic005G021600 Sobic003G110100 Sobic003G110100 Sobic010G208700--Sobic003G110100
Octagon: transcription factors


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