Gene annotation
Transcriptome id Sobic.010G198000.3,Sobic.010G198000.1,Sobic.010G198000.2
Synonym TSBtype2, Sb10g024680
Functional annotation tryptophan synthase beta chain 2, putative, expressed
UniProt A0A194YKA4 , C5Z690 , A0A194YLE2
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF21
NCBI CDD -
KEGG Orthology K06001; tryptophan synthase beta chain
Gene Ontology GO:0004834; tryptophan synthase activity GO:0000162tryptophan biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G38530 : tryptophan synthase beta type 2
RAP-DB (Rice) LOC_Os06g42560.2,LOC_Os06g42560.1 : tryptophan synthase beta chain 2, putative, expressed
MaizeGDB (Corn) Zm00025a051483
Brachypodium KQK17602
Barley HORVU4Hr1G035330.2 , HORVU4Hr1G035330.1 , HORVU4Hr1G035330.3 , HORVU4Hr1G035330.4 , HORVU7Hr1G092800.8 , HORVU7Hr1G092800.9 , HORVU7Hr1G092800.6 , HORVU7Hr1G092800.7 , HORVU7Hr1G092800.4 , HORVU7Hr1G092800.5 , HORVU7Hr1G092800.2 , HORVU7Hr1G092800.3 , HORVU7Hr1G092800.1
Wheat TraesCS7B02G294800 , TraesCS7B02G294800 , TraesCS7D02G388400 , TraesCS7A02G392800 , TraesCS7A02G392800 , TraesCS7D02G388400 , TraesCS7D02G388400
Populus -


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cDNA sequences
Sobic.010G198000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G447700 expressed protein -
2 Sobic.010G218600 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.006G256600 expressed protein -
4 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G193700 carbamoyl-phosphate synthase large chain, putative, expressed K01955: carB, carbamoyl-phosphate synthase large subunit
6 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
7 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
8 Sobic.001G391900 nifU, putative, expressed -
9 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
10 Sobic.001G308800 expressed protein K18065: Cdc25 family phosphatase
11 Sobic.009G055800 expressed protein -
12 Sobic.002G303300 anthranilate phosphoribosyltransferase, putative, expressed -
13 Sobic.001G035800 heavy metal-associated domain containing protein, expressed -
14 Sobic.008G116300 expressed protein -
15 Sobic.001G291900 expressed protein -
16 Sobic.010G265500 expressed protein -
17 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
18 Sobic.006G044400 OsSCP23 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
19 Sobic.002G065200 pentatricopeptide, putative, expressed -
20 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase


Gene co-expression network
sample Sobic010G198000 Sobic010G198000 Sobic001G447700 Sobic001G447700 Sobic010G198000--Sobic001G447700 Sobic010G218600 Sobic010G218600 Sobic010G198000--Sobic010G218600 Sobic006G256600 Sobic006G256600 Sobic010G198000--Sobic006G256600 Sobic001G029100 Sobic001G029100 Sobic010G198000--Sobic001G029100 Sobic003G193700 Sobic003G193700 Sobic010G198000--Sobic003G193700 Sobic003G085000 Sobic003G085000 Sobic010G198000--Sobic003G085000 Sobic010G255100 Sobic010G255100 Sobic010G198000--Sobic010G255100 Sobic001G391900 Sobic001G391900 Sobic010G198000--Sobic001G391900 Sobic001G295300 Sobic001G295300 Sobic010G198000--Sobic001G295300 Sobic001G291900 Sobic001G291900 Sobic001G447700--Sobic001G291900 Sobic001G447700--Sobic003G085000 Sobic001G447700--Sobic006G256600 Sobic001G035800 Sobic001G035800 Sobic001G447700--Sobic001G035800 Sobic001G104800 Sobic001G104800 Sobic001G447700--Sobic001G104800 Sobic002G198600 Sobic002G198600 Sobic001G447700--Sobic002G198600 Sobic001G447700--Sobic001G295300 Sobic001G308800 Sobic001G308800 Sobic001G447700--Sobic001G308800 Sobic006G107600 Sobic006G107600 Sobic001G447700--Sobic006G107600 Sobic001G498300 Sobic001G498300 Sobic010G218600--Sobic001G498300 Sobic005G021600 Sobic005G021600 Sobic010G218600--Sobic005G021600 Sobic010G265500 Sobic010G265500 Sobic010G218600--Sobic010G265500 Sobic007G178500 Sobic007G178500 Sobic010G218600--Sobic007G178500 Sobic008G063500 Sobic008G063500 Sobic010G218600--Sobic008G063500 Sobic001G407900 Sobic001G407900 Sobic010G218600--Sobic001G407900 Sobic010G218600--Sobic001G447700 Sobic007G023300 Sobic007G023300 Sobic010G218600--Sobic007G023300 Sobic005G192600 Sobic005G192600 Sobic010G218600--Sobic005G192600 Sobic006G256600--Sobic010G255100 Sobic006G256600--Sobic003G085000 Sobic006G256600--Sobic001G291900 Sobic006G210400 Sobic006G210400 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G055800 Sobic006G055800 Sobic006G256600--Sobic006G055800 Sobic005G002900 Sobic005G002900 Sobic006G256600--Sobic005G002900 Sobic001G309300 Sobic001G309300 Sobic006G256600--Sobic001G309300 Sobic004G065300 Sobic004G065300 Sobic006G256600--Sobic004G065300 Sobic004G175500 Sobic004G175500 Sobic001G029100--Sobic004G175500 Sobic009G030900 Sobic009G030900 Sobic001G029100--Sobic009G030900 Sobic009G143100 Sobic009G143100 Sobic001G029100--Sobic009G143100 Sobic003G387800 Sobic003G387800 Sobic001G029100--Sobic003G387800 Sobic002G033800 Sobic002G033800 Sobic001G029100--Sobic002G033800 Sobic007G004800 Sobic007G004800 Sobic001G029100--Sobic007G004800 Sobic001G029100--Sobic002G198600 Sobic006G093900 Sobic006G093900 Sobic001G029100--Sobic006G093900 Sobic007G071500 Sobic007G071500 Sobic001G029100--Sobic007G071500 Sobic003G193700--Sobic006G256600 Sobic004G307400 Sobic004G307400 Sobic003G193700--Sobic004G307400 Sobic004G016400 Sobic004G016400 Sobic003G193700--Sobic004G016400 Sobic003G193700--Sobic001G291900 Sobic010G023700 Sobic010G023700 Sobic003G193700--Sobic010G023700 Sobic003G193700--Sobic001G295300 Sobic003G387100 Sobic003G387100 Sobic003G193700--Sobic003G387100 Sobic003G193700--Sobic010G255100 Sobic005G184300 Sobic005G184300 Sobic003G193700--Sobic005G184300 Sobic003G085000--Sobic006G256600 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic003G085000--Sobic010G255100 Sobic004G336000 Sobic004G336000 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic003G085000--Sobic005G002900 Sobic003G085000--Sobic001G104800 Sobic003G085000--Sobic004G065300 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500 Sobic002G102200 Sobic002G102200 Sobic001G391900--Sobic002G102200 Sobic001G391900--Sobic006G093900 Sobic002G030500 Sobic002G030500 Sobic001G391900--Sobic002G030500 Sobic002G036000 Sobic002G036000 Sobic001G391900--Sobic002G036000 Sobic006G188000 Sobic006G188000 Sobic001G391900--Sobic006G188000 Sobic009G059300 Sobic009G059300 Sobic001G391900--Sobic009G059300 Sobic001G102800 Sobic001G102800 Sobic001G391900--Sobic001G102800 Sobic004G227200 Sobic004G227200 Sobic001G391900--Sobic004G227200 Sobic001G391900--Sobic003G387100 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G295300--Sobic001G308800 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic001G295300--Sobic004G227200 Sobic001G295300--Sobic001G104800
Octagon: transcription factors


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