Gene annotation
Transcriptome id Sobic.004G309300.1
Synonym NIR1, ATHNIR, Sb04g034160, NIR
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ferredoxin--nitrite reductase, putative, expressed
UniProt C5XSV1
Pfam PF03460 PF01077
Panther DB PTHR32439 PTHR32439:SF0
NCBI CDD -
KEGG Orthology K00366; ferredoxin-nitrite reductase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT2G15620 : nitrite reductase 1
RAP-DB (Rice) LOC_Os01g25484.2 : ferredoxin--nitrite reductase, putative, expressed
MaizeGDB (Corn) Zm00025a022222 , Zm00025a033097
Brachypodium KQK01753
Barley HORVU6Hr1G080750.12 , HORVU6Hr1G080750.10 , HORVU6Hr1G080750.11 , HORVU6Hr1G080750.4 , HORVU6Hr1G080750.5 , HORVU6Hr1G080750.6 , HORVU6Hr1G080750.7 , HORVU6Hr1G080750.1 , HORVU6Hr1G080750.2 , HORVU6Hr1G080750.3 , HORVU6Hr1G080750.8 , HORVU6Hr1G080750.9
Wheat TraesCS6A02G333900 , TraesCS6D02G313100 , TraesCS6B02G364600 , TraesCS6B02G364600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
2 Sobic.004G312800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine phosphatase family protein, putative, expressed K18045: SIW14, tyrosine-protein phosphatase SIW14
3 Sobic.003G229600 siroheme synthase, putative, expressed -
4 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
5 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
6 Sobic.004G028200 UP-9A, putative, expressed -
7 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
8 Sobic.009G210200 Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed -
9 Sobic.001G134800 integral membrane HPP family protein, putative, expressed -
10 Sobic.004G280100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G185201 - -
12 Sobic.001G344900 jacalin-like lectin domain containing protein, expressed -
13 Sobic.009G176800 DUF567 domain containing protein, putative, expressed -
14 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
15 Sobic.002G183900 DUF581 domain containing protein, expressed -
16 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
17 Sobic.006G084400 OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
18 Sobic.007G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
19 Sobic.007G004700 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
20 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561


Gene co-expression network
sample Sobic004G309300 Sobic004G309300 Sobic006G249400 Sobic006G249400 Sobic004G309300--Sobic006G249400 Sobic004G312800 Sobic004G312800 Sobic004G309300--Sobic004G312800 Sobic003G229600 Sobic003G229600 Sobic004G309300--Sobic003G229600 Sobic001G295300 Sobic001G295300 Sobic004G309300--Sobic001G295300 Sobic003G008900 Sobic003G008900 Sobic004G309300--Sobic003G008900 Sobic004G028200 Sobic004G028200 Sobic004G309300--Sobic004G028200 Sobic003G022300 Sobic003G022300 Sobic004G309300--Sobic003G022300 Sobic009G210200 Sobic009G210200 Sobic004G309300--Sobic009G210200 Sobic001G134800 Sobic001G134800 Sobic004G309300--Sobic001G134800 Sobic004G044200 Sobic004G044200 Sobic006G249400--Sobic004G044200 Sobic003G234101 Sobic003G234101 Sobic006G249400--Sobic003G234101 Sobic007G075700 Sobic007G075700 Sobic006G249400--Sobic007G075700 Sobic005G218600 Sobic005G218600 Sobic006G249400--Sobic005G218600 Sobic006G249400--Sobic004G309300 Sobic006G256200 Sobic006G256200 Sobic006G249400--Sobic006G256200 Sobic005G218700 Sobic005G218700 Sobic006G249400--Sobic005G218700 Sobic006G033800 Sobic006G033800 Sobic006G249400--Sobic006G033800 Sobic001G012600 Sobic001G012600 Sobic006G249400--Sobic001G012600 Sobic002G183900 Sobic002G183900 Sobic004G312800--Sobic002G183900 Sobic004G312800--Sobic009G210200 Sobic004G303200 Sobic004G303200 Sobic004G312800--Sobic004G303200 Sobic006G235350 Sobic006G235350 Sobic004G312800--Sobic006G235350 Sobic005G039700 Sobic005G039700 Sobic004G312800--Sobic005G039700 Sobic002G405100 Sobic002G405100 Sobic004G312800--Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic004G312800--Sobic002G133900 Sobic009G140300 Sobic009G140300 Sobic004G312800--Sobic009G140300 Sobic004G331700 Sobic004G331700 Sobic004G312800--Sobic004G331700 Sobic003G229600--Sobic004G309300 Sobic003G029200 Sobic003G029200 Sobic003G229600--Sobic003G029200 Sobic007G153900 Sobic007G153900 Sobic003G229600--Sobic007G153900 Sobic006G143100 Sobic006G143100 Sobic003G229600--Sobic006G143100 Sobic001G302200 Sobic001G302200 Sobic003G229600--Sobic001G302200 Sobic001G011700 Sobic001G011700 Sobic003G229600--Sobic001G011700 Sobic001G521200 Sobic001G521200 Sobic003G229600--Sobic001G521200 Sobic006G168650 Sobic006G168650 Sobic003G229600--Sobic006G168650 Sobic010G160700 Sobic010G160700 Sobic003G229600--Sobic010G160700 Sobic001G291900 Sobic001G291900 Sobic001G295300--Sobic001G291900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic003G008900--Sobic001G295300 Sobic003G008900--Sobic001G308800 Sobic001G023700 Sobic001G023700 Sobic003G008900--Sobic001G023700 Sobic003G008900--Sobic003G022300 Sobic002G065200 Sobic002G065200 Sobic003G008900--Sobic002G065200 Sobic003G008900--Sobic004G227200 Sobic001G221300 Sobic001G221300 Sobic003G008900--Sobic001G221300 Sobic007G178500 Sobic007G178500 Sobic003G008900--Sobic007G178500 Sobic003G008900--Sobic001G006400 Sobic006G116050 Sobic006G116050 Sobic004G028200--Sobic006G116050 Sobic004G280100 Sobic004G280100 Sobic004G028200--Sobic004G280100 Sobic004G028200--Sobic001G295300 Sobic006G093900 Sobic006G093900 Sobic004G028200--Sobic006G093900 Sobic001G519800 Sobic001G519800 Sobic004G028200--Sobic001G519800 Sobic001G391900 Sobic001G391900 Sobic004G028200--Sobic001G391900 Sobic001G129000 Sobic001G129000 Sobic004G028200--Sobic001G129000 Sobic004G028200--Sobic004G303200 Sobic002G339600 Sobic002G339600 Sobic004G028200--Sobic002G339600 Sobic002G227700 Sobic002G227700 Sobic003G022300--Sobic002G227700 Sobic004G020300 Sobic004G020300 Sobic003G022300--Sobic004G020300 Sobic003G022300--Sobic001G221300 Sobic003G022300--Sobic001G295300 Sobic003G022300--Sobic009G210200 Sobic001G033100 Sobic001G033100 Sobic003G022300--Sobic001G033100 Sobic006G067400 Sobic006G067400 Sobic003G022300--Sobic006G067400 Sobic004G343900 Sobic004G343900 Sobic003G022300--Sobic004G343900 Sobic007G004700 Sobic007G004700 Sobic003G022300--Sobic007G004700 Sobic008G064500 Sobic008G064500 Sobic009G210200--Sobic008G064500 Sobic009G210200--Sobic004G303200 Sobic009G210200--Sobic004G020300 Sobic009G210200--Sobic006G067400 Sobic009G210200--Sobic010G160700 Sobic008G171300 Sobic008G171300 Sobic009G210200--Sobic008G171300 Sobic002G233700 Sobic002G233700 Sobic009G210200--Sobic002G233700 Sobic009G210200--Sobic006G235350 Sobic002G272100 Sobic002G272100 Sobic009G210200--Sobic002G272100 Sobic001G134800--Sobic004G312800 Sobic002G314400 Sobic002G314400 Sobic001G134800--Sobic002G314400 Sobic006G101500 Sobic006G101500 Sobic001G134800--Sobic006G101500 Sobic001G134800--Sobic005G039700 Sobic002G036000 Sobic002G036000 Sobic001G134800--Sobic002G036000 Sobic003G131600 Sobic003G131600 Sobic001G134800--Sobic003G131600 Sobic001G134700 Sobic001G134700 Sobic001G134800--Sobic001G134700 Sobic001G134800--Sobic001G011700 Sobic001G102800 Sobic001G102800 Sobic001G134800--Sobic001G102800
Octagon: transcription factors


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