Gene annotation
Transcriptome id Sobic.007G004700.1
Synonym ATFD2, FEDA, Sb07g000610
Functional annotation Ferredoxin-1 (PubMedID : 26186930)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5YLG3
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF110
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT1G60950 : 2Fe-2S ferredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os08g01380.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040148 , Zm00025a040147 , Zm00025a040143
Brachypodium KQJ94784
Barley HORVU7Hr1G077750.1 , HORVU7Hr1G077740.1
Wheat -
Populus -


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cDNA sequences
Sobic.007G004700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G309400 DCL, chloroplast precursor, putative, expressed -
2 Sobic.001G035800 heavy metal-associated domain containing protein, expressed -
3 Sobic.001G175700 expressed protein -
4 Sobic.007G205500 expressed protein -
5 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
6 Sobic.001G405700 - -
7 Sobic.003G254600 expressed protein -
8 Sobic.003G022300 SOUL heme-binding protein, putative, expressed -
9 Sobic.009G174700 serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed -
10 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
11 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
12 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
13 Sobic.009G131800 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
14 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
15 Sobic.004G020300 expressed protein -
16 Sobic.004G012900 expressed protein -
17 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
18 Sobic.001G413600 expressed protein -
19 Sobic.006G101500 expressed protein -
20 Sobic.001G168800 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -


Gene co-expression network
sample Sobic007G004700 Sobic007G004700 Sobic004G309400 Sobic004G309400 Sobic007G004700--Sobic004G309400 Sobic001G035800 Sobic001G035800 Sobic007G004700--Sobic001G035800 Sobic001G175700 Sobic001G175700 Sobic007G004700--Sobic001G175700 Sobic007G205500 Sobic007G205500 Sobic007G004700--Sobic007G205500 Sobic001G083100 Sobic001G083100 Sobic007G004700--Sobic001G083100 Sobic001G405700 Sobic001G405700 Sobic007G004700--Sobic001G405700 Sobic003G254600 Sobic003G254600 Sobic007G004700--Sobic003G254600 Sobic003G022300 Sobic003G022300 Sobic007G004700--Sobic003G022300 Sobic009G174700 Sobic009G174700 Sobic007G004700--Sobic009G174700 Sobic004G309400--Sobic007G004700 Sobic009G131800 Sobic009G131800 Sobic004G309400--Sobic009G131800 Sobic004G309400--Sobic001G083100 Sobic004G309400--Sobic007G205500 Sobic001G413600 Sobic001G413600 Sobic004G309400--Sobic001G413600 Sobic004G309400--Sobic001G175700 Sobic002G272100 Sobic002G272100 Sobic004G309400--Sobic002G272100 Sobic006G021600 Sobic006G021600 Sobic004G309400--Sobic006G021600 Sobic006G067400 Sobic006G067400 Sobic004G309400--Sobic006G067400 Sobic009G055800 Sobic009G055800 Sobic001G035800--Sobic009G055800 Sobic001G417200 Sobic001G417200 Sobic001G035800--Sobic001G417200 Sobic004G227200 Sobic004G227200 Sobic001G035800--Sobic004G227200 Sobic001G035800--Sobic001G405700 Sobic006G093900 Sobic006G093900 Sobic001G035800--Sobic006G093900 Sobic001G035800--Sobic003G254600 Sobic003G412900 Sobic003G412900 Sobic001G035800--Sobic003G412900 Sobic003G439000 Sobic003G439000 Sobic001G035800--Sobic003G439000 Sobic001G168800 Sobic001G168800 Sobic001G035800--Sobic001G168800 Sobic006G050400 Sobic006G050400 Sobic001G175700--Sobic006G050400 Sobic001G175700--Sobic009G131800 Sobic004G012900 Sobic004G012900 Sobic001G175700--Sobic004G012900 Sobic001G175700--Sobic001G405700 Sobic002G233700 Sobic002G233700 Sobic001G175700--Sobic002G233700 Sobic003G342200 Sobic003G342200 Sobic001G175700--Sobic003G342200 Sobic001G175700--Sobic001G083100 Sobic004G253400 Sobic004G253400 Sobic001G175700--Sobic004G253400 Sobic006G155500 Sobic006G155500 Sobic001G175700--Sobic006G155500 Sobic002G299900 Sobic002G299900 Sobic007G205500--Sobic002G299900 Sobic007G205500--Sobic004G309400 Sobic007G205500--Sobic006G067400 Sobic007G205500--Sobic001G413600 Sobic004G020300 Sobic004G020300 Sobic007G205500--Sobic004G020300 Sobic002G227700 Sobic002G227700 Sobic007G205500--Sobic002G227700 Sobic007G205500--Sobic006G021600 Sobic007G205500--Sobic007G004700 Sobic001G314200 Sobic001G314200 Sobic007G205500--Sobic001G314200 Sobic005G002900 Sobic005G002900 Sobic001G083100--Sobic005G002900 Sobic009G148500 Sobic009G148500 Sobic001G083100--Sobic009G148500 Sobic008G039600 Sobic008G039600 Sobic001G083100--Sobic008G039600 Sobic001G469933 Sobic001G469933 Sobic001G083100--Sobic001G469933 Sobic006G055800 Sobic006G055800 Sobic001G083100--Sobic006G055800 Sobic001G083100--Sobic002G272100 Sobic003G372900 Sobic003G372900 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic008G073100 Sobic008G073100 Sobic001G083100--Sobic008G073100 Sobic005G194100 Sobic005G194100 Sobic001G405700--Sobic005G194100 Sobic007G052400 Sobic007G052400 Sobic001G405700--Sobic007G052400 Sobic010G005500 Sobic010G005500 Sobic001G405700--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic001G405700--Sobic009G030900 Sobic001G405700--Sobic001G175700 Sobic001G405700--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic001G405700--Sobic008G171300 Sobic004G239100 Sobic004G239100 Sobic001G405700--Sobic004G239100 Sobic001G405700--Sobic002G227700 Sobic001G196200 Sobic001G196200 Sobic003G254600--Sobic001G196200 Sobic003G254600--Sobic001G035800 Sobic006G107600 Sobic006G107600 Sobic003G254600--Sobic006G107600 Sobic003G421400 Sobic003G421400 Sobic003G254600--Sobic003G421400 Sobic003G254600--Sobic009G055800 Sobic001G489800 Sobic001G489800 Sobic003G254600--Sobic001G489800 Sobic001G447700 Sobic001G447700 Sobic003G254600--Sobic001G447700 Sobic001G469900 Sobic001G469900 Sobic003G254600--Sobic001G469900 Sobic007G085800 Sobic007G085800 Sobic003G254600--Sobic007G085800 Sobic003G022300--Sobic002G227700 Sobic003G022300--Sobic004G020300 Sobic001G221300 Sobic001G221300 Sobic003G022300--Sobic001G221300 Sobic001G295300 Sobic001G295300 Sobic003G022300--Sobic001G295300 Sobic009G210200 Sobic009G210200 Sobic003G022300--Sobic009G210200 Sobic001G033100 Sobic001G033100 Sobic003G022300--Sobic001G033100 Sobic003G022300--Sobic006G067400 Sobic004G343900 Sobic004G343900 Sobic003G022300--Sobic004G343900 Sobic003G022300--Sobic007G004700 Sobic002G133900 Sobic002G133900 Sobic009G174700--Sobic002G133900 Sobic010G201600 Sobic010G201600 Sobic009G174700--Sobic010G201600 Sobic002G405100 Sobic002G405100 Sobic009G174700--Sobic002G405100 Sobic009G174700--Sobic001G175700 Sobic006G235350 Sobic006G235350 Sobic009G174700--Sobic006G235350 Sobic009G174700--Sobic009G131800 Sobic009G174700--Sobic002G272100 Sobic009G174700--Sobic002G233700 Sobic003G070900 Sobic003G070900 Sobic009G174700--Sobic003G070900
Octagon: transcription factors


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