Gene annotation
Transcriptome id Sobic.004G028200.1
Synonym LSU3, Sb04g002480
Functional annotation UP-9A, putative, expressed
UniProt C5XTT1
Pfam -
Panther DB PTHR34283
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49580 : response to low sulfur 1
RAP-DB (Rice) LOC_Os02g03710.1 : UP-9A, putative, expressed
MaizeGDB (Corn) Zm00025a018839
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G028200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116050 - -
2 Sobic.004G280100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
4 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
5 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
6 Sobic.001G391900 nifU, putative, expressed -
7 Sobic.001G129000 DnaK family protein, putative, expressed -
8 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561
9 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
10 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
11 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
12 Sobic.005G202500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tropinone reductase 2, putative, expressed K08081: tropinone reductase I
13 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
14 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
15 Sobic.006G220800 -(PubMedID : 26976818)@aminomethyltransferase, putative, expressed K00605: gcvT, aminomethyltransferase
16 Sobic.001G517700 catalase domain containing protein, expressed K03781: katE, CAT, catB, catalase
17 Sobic.009G140300 MLO domain containing protein, putative, expressed K08472: mlo protein
18 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
19 Sobic.006G272900 peroxidase activity(PubMedID : 29491869)@glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
20 Sobic.002G314300 OsAPRL1 adenosine 5\'-phosphosulfate reductase-like OsAPRL1, expressed K05907: adenylyl-sulfate reductase (glutathione)


Gene co-expression network
sample Sobic004G028200 Sobic004G028200 Sobic006G116050 Sobic006G116050 Sobic004G028200--Sobic006G116050 Sobic004G280100 Sobic004G280100 Sobic004G028200--Sobic004G280100 Sobic001G295300 Sobic001G295300 Sobic004G028200--Sobic001G295300 Sobic006G093900 Sobic006G093900 Sobic004G028200--Sobic006G093900 Sobic001G519800 Sobic001G519800 Sobic004G028200--Sobic001G519800 Sobic001G391900 Sobic001G391900 Sobic004G028200--Sobic001G391900 Sobic001G129000 Sobic001G129000 Sobic004G028200--Sobic001G129000 Sobic004G303200 Sobic004G303200 Sobic004G028200--Sobic004G303200 Sobic002G339600 Sobic002G339600 Sobic004G028200--Sobic002G339600 Sobic006G116050--Sobic001G129000 Sobic002G036000 Sobic002G036000 Sobic006G116050--Sobic002G036000 Sobic001G329400 Sobic001G329400 Sobic006G116050--Sobic001G329400 Sobic002G324500 Sobic002G324500 Sobic006G116050--Sobic002G324500 Sobic007G034300 Sobic007G034300 Sobic006G116050--Sobic007G034300 Sobic003G024300 Sobic003G024300 Sobic006G116050--Sobic003G024300 Sobic004G125700 Sobic004G125700 Sobic006G116050--Sobic004G125700 Sobic003G431700 Sobic003G431700 Sobic006G116050--Sobic003G431700 Sobic006G057866 Sobic006G057866 Sobic006G116050--Sobic006G057866 Sobic004G280100--Sobic001G295300 Sobic003G022300 Sobic003G022300 Sobic004G280100--Sobic003G022300 Sobic001G196200 Sobic001G196200 Sobic004G280100--Sobic001G196200 Sobic004G343100 Sobic004G343100 Sobic004G280100--Sobic004G343100 Sobic010G199000 Sobic010G199000 Sobic004G280100--Sobic010G199000 Sobic002G056800 Sobic002G056800 Sobic004G280100--Sobic002G056800 Sobic001G006400 Sobic001G006400 Sobic004G280100--Sobic001G006400 Sobic001G308800 Sobic001G308800 Sobic004G280100--Sobic001G308800 Sobic009G131800 Sobic009G131800 Sobic004G280100--Sobic009G131800 Sobic001G291900 Sobic001G291900 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G104800 Sobic001G104800 Sobic001G295300--Sobic001G104800 Sobic007G004800 Sobic007G004800 Sobic006G093900--Sobic007G004800 Sobic009G140600 Sobic009G140600 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic006G093900--Sobic004G227200 Sobic006G093900--Sobic001G519800 Sobic009G043000 Sobic009G043000 Sobic006G093900--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic006G093900--Sobic001G102800 Sobic008G102000 Sobic008G102000 Sobic006G093900--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic006G093900--Sobic003G002300 Sobic004G272100 Sobic004G272100 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic001G519800--Sobic010G201700 Sobic004G308700 Sobic004G308700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic002G102200 Sobic002G102200 Sobic001G391900--Sobic002G102200 Sobic001G391900--Sobic006G093900 Sobic002G030500 Sobic002G030500 Sobic001G391900--Sobic002G030500 Sobic001G391900--Sobic002G036000 Sobic006G188000 Sobic006G188000 Sobic001G391900--Sobic006G188000 Sobic009G059300 Sobic009G059300 Sobic001G391900--Sobic009G059300 Sobic001G391900--Sobic001G102800 Sobic001G391900--Sobic004G227200 Sobic003G387100 Sobic003G387100 Sobic001G391900--Sobic003G387100 Sobic001G129000--Sobic002G036000 Sobic007G140800 Sobic007G140800 Sobic001G129000--Sobic007G140800 Sobic001G129000--Sobic001G102800 Sobic007G009200 Sobic007G009200 Sobic001G129000--Sobic007G009200 Sobic006G207800 Sobic006G207800 Sobic001G129000--Sobic006G207800 Sobic001G129000--Sobic001G329400 Sobic001G129000--Sobic003G024300 Sobic009G113800 Sobic009G113800 Sobic001G129000--Sobic009G113800 Sobic006G077400 Sobic006G077400 Sobic001G129000--Sobic006G077400 Sobic002G233700 Sobic002G233700 Sobic004G303200--Sobic002G233700 Sobic007G225500 Sobic007G225500 Sobic004G303200--Sobic007G225500 Sobic006G102000 Sobic006G102000 Sobic004G303200--Sobic006G102000 Sobic010G160700 Sobic010G160700 Sobic004G303200--Sobic010G160700 Sobic010G035400 Sobic010G035400 Sobic004G303200--Sobic010G035400 Sobic007G052400 Sobic007G052400 Sobic004G303200--Sobic007G052400 Sobic004G303200--Sobic009G059300 Sobic001G005200 Sobic001G005200 Sobic004G303200--Sobic001G005200 Sobic004G303200--Sobic006G207800 Sobic001G339500 Sobic001G339500 Sobic002G339600--Sobic001G339500 Sobic006G215600 Sobic006G215600 Sobic002G339600--Sobic006G215600 Sobic002G111200 Sobic002G111200 Sobic002G339600--Sobic002G111200 Sobic003G443500 Sobic003G443500 Sobic002G339600--Sobic003G443500 Sobic002G128900 Sobic002G128900 Sobic002G339600--Sobic002G128900 Sobic004G151500 Sobic004G151500 Sobic002G339600--Sobic004G151500 Sobic001G257700 Sobic001G257700 Sobic002G339600--Sobic001G257700 Sobic002G309900 Sobic002G309900 Sobic002G339600--Sobic002G309900 Sobic007G033800 Sobic007G033800 Sobic002G339600--Sobic007G033800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.