Gene annotation
Transcriptome id Sobic.003G229600.1
Synonym UPM1
Functional annotation siroheme synthase, putative, expressed
UniProt A0A1B6Q4V2
Pfam PF00590
Panther DB PTHR21091 PTHR21091:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G40850 : urophorphyrin methylase 1
RAP-DB (Rice) LOC_Os01g44050.1 : siroheme synthase, putative, expressed
MaizeGDB (Corn) Zm00025a028323 , Zm00025a038629
Brachypodium KQK08861
Barley HORVU3Hr1G056960.11 , HORVU3Hr1G056960.10 , HORVU3Hr1G056960.12 , HORVU3Hr1G056960.1 , HORVU3Hr1G056960.3 , HORVU3Hr1G056960.2 , HORVU3Hr1G056960.5 , HORVU3Hr1G056960.4 , HORVU3Hr1G056960.7 , HORVU3Hr1G056960.6 , HORVU3Hr1G056960.9
Wheat TraesCS3A02G227700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G309300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ferredoxin--nitrite reductase, putative, expressed K00366: ferredoxin-nitrite reductase
2 Sobic.003G029200 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
3 Sobic.007G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
4 Sobic.006G143100 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
5 Sobic.001G302200 glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.001G011700 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
7 Sobic.001G521200 expressed protein -
8 Sobic.006G168650 - -
9 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
10 Sobic.001G185800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.004G016400 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
12 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
13 Sobic.010G079000 Phosphotyrosine protein phosphatases superfamily protein(PubMedID : 26465154)@Phosphotyrosine protein phosphatases superfamily protein(PubMedID : 26465154)@tyrosine phosphatase family protein, putative, expressed K18045: SIW14, tyrosine-protein phosphatase SIW14
14 Sobic.004G028200 UP-9A, putative, expressed -
15 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
16 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
17 Sobic.001G302800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.001G025400 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
19 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
20 Sobic.002G402700 -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed K00284: GLU, glutamate synthase (ferredoxin)


Gene co-expression network
sample Sobic003G229600 Sobic003G229600 Sobic004G309300 Sobic004G309300 Sobic003G229600--Sobic004G309300 Sobic003G029200 Sobic003G029200 Sobic003G229600--Sobic003G029200 Sobic007G153900 Sobic007G153900 Sobic003G229600--Sobic007G153900 Sobic006G143100 Sobic006G143100 Sobic003G229600--Sobic006G143100 Sobic001G302200 Sobic001G302200 Sobic003G229600--Sobic001G302200 Sobic001G011700 Sobic001G011700 Sobic003G229600--Sobic001G011700 Sobic001G521200 Sobic001G521200 Sobic003G229600--Sobic001G521200 Sobic006G168650 Sobic006G168650 Sobic003G229600--Sobic006G168650 Sobic010G160700 Sobic010G160700 Sobic003G229600--Sobic010G160700 Sobic006G249400 Sobic006G249400 Sobic004G309300--Sobic006G249400 Sobic004G312800 Sobic004G312800 Sobic004G309300--Sobic004G312800 Sobic004G309300--Sobic003G229600 Sobic001G295300 Sobic001G295300 Sobic004G309300--Sobic001G295300 Sobic003G008900 Sobic003G008900 Sobic004G309300--Sobic003G008900 Sobic004G028200 Sobic004G028200 Sobic004G309300--Sobic004G028200 Sobic003G022300 Sobic003G022300 Sobic004G309300--Sobic003G022300 Sobic009G210200 Sobic009G210200 Sobic004G309300--Sobic009G210200 Sobic001G134800 Sobic001G134800 Sobic004G309300--Sobic001G134800 Sobic004G227200 Sobic004G227200 Sobic003G029200--Sobic004G227200 Sobic008G116300 Sobic008G116300 Sobic003G029200--Sobic008G116300 Sobic001G183000 Sobic001G183000 Sobic003G029200--Sobic001G183000 Sobic004G331700 Sobic004G331700 Sobic003G029200--Sobic004G331700 Sobic002G036000 Sobic002G036000 Sobic003G029200--Sobic002G036000 Sobic001G517700 Sobic001G517700 Sobic003G029200--Sobic001G517700 Sobic005G001700 Sobic005G001700 Sobic003G029200--Sobic005G001700 Sobic001G102800 Sobic001G102800 Sobic003G029200--Sobic001G102800 Sobic006G207800 Sobic006G207800 Sobic003G029200--Sobic006G207800 Sobic003G372400 Sobic003G372400 Sobic007G153900--Sobic003G372400 Sobic005G089600 Sobic005G089600 Sobic007G153900--Sobic005G089600 Sobic003G371250 Sobic003G371250 Sobic007G153900--Sobic003G371250 Sobic002G402700 Sobic002G402700 Sobic007G153900--Sobic002G402700 Sobic006G093100 Sobic006G093100 Sobic007G153900--Sobic006G093100 Sobic007G153900--Sobic001G183000 Sobic007G153900--Sobic001G521200 Sobic004G006400 Sobic004G006400 Sobic007G153900--Sobic004G006400 Sobic002G005600 Sobic002G005600 Sobic007G153900--Sobic002G005600 Sobic002G352100 Sobic002G352100 Sobic006G143100--Sobic002G352100 Sobic004G235200 Sobic004G235200 Sobic006G143100--Sobic004G235200 Sobic007G136900 Sobic007G136900 Sobic006G143100--Sobic007G136900 Sobic001G046900 Sobic001G046900 Sobic006G143100--Sobic001G046900 Sobic010G189300 Sobic010G189300 Sobic006G143100--Sobic010G189300 Sobic001G177000 Sobic001G177000 Sobic006G143100--Sobic001G177000 Sobic005G087000 Sobic005G087000 Sobic006G143100--Sobic005G087000 Sobic008G063500 Sobic008G063500 Sobic006G143100--Sobic008G063500 Sobic007G223500 Sobic007G223500 Sobic006G143100--Sobic007G223500 Sobic004G136600 Sobic004G136600 Sobic001G302200--Sobic004G136600 Sobic003G243600 Sobic003G243600 Sobic001G302200--Sobic003G243600 Sobic002G339600 Sobic002G339600 Sobic001G302200--Sobic002G339600 Sobic003G349200 Sobic003G349200 Sobic001G302200--Sobic003G349200 Sobic007G033800 Sobic007G033800 Sobic001G302200--Sobic007G033800 Sobic004G317500 Sobic004G317500 Sobic001G302200--Sobic004G317500 Sobic003G277600 Sobic003G277600 Sobic001G302200--Sobic003G277600 Sobic003G266500 Sobic003G266500 Sobic001G302200--Sobic003G266500 Sobic010G023700 Sobic010G023700 Sobic001G302200--Sobic010G023700 Sobic008G021300 Sobic008G021300 Sobic001G011700--Sobic008G021300 Sobic004G175500 Sobic004G175500 Sobic001G011700--Sobic004G175500 Sobic004G343300 Sobic004G343300 Sobic001G011700--Sobic004G343300 Sobic009G125400 Sobic009G125400 Sobic001G011700--Sobic009G125400 Sobic007G004800 Sobic007G004800 Sobic001G011700--Sobic007G004800 Sobic006G103400 Sobic006G103400 Sobic001G011700--Sobic006G103400 Sobic003G132100 Sobic003G132100 Sobic001G011700--Sobic003G132100 Sobic002G152700 Sobic002G152700 Sobic001G011700--Sobic002G152700 Sobic003G197400 Sobic003G197400 Sobic001G011700--Sobic003G197400 Sobic001G521200--Sobic001G183000 Sobic008G006100 Sobic008G006100 Sobic001G521200--Sobic008G006100 Sobic003G037300 Sobic003G037300 Sobic001G521200--Sobic003G037300 Sobic003G233700 Sobic003G233700 Sobic001G521200--Sobic003G233700 Sobic001G521200--Sobic002G402700 Sobic001G521200--Sobic004G006400 Sobic002G133900 Sobic002G133900 Sobic001G521200--Sobic002G133900 Sobic005G100300 Sobic005G100300 Sobic001G521200--Sobic005G100300 Sobic009G062400 Sobic009G062400 Sobic001G521200--Sobic009G062400 Sobic003G306600 Sobic003G306600 Sobic006G168650--Sobic003G306600 Sobic006G168650--Sobic001G521200 Sobic006G168650--Sobic002G402700 Sobic003G179350 Sobic003G179350 Sobic006G168650--Sobic003G179350 Sobic006G168650--Sobic003G037300 Sobic004G298900 Sobic004G298900 Sobic006G168650--Sobic004G298900 Sobic001G134700 Sobic001G134700 Sobic006G168650--Sobic001G134700 Sobic006G168650--Sobic008G006100 Sobic008G074000 Sobic008G074000 Sobic006G168650--Sobic008G074000 Sobic003G002300 Sobic003G002300 Sobic010G160700--Sobic003G002300 Sobic007G052400 Sobic007G052400 Sobic010G160700--Sobic007G052400 Sobic001G519800 Sobic001G519800 Sobic010G160700--Sobic001G519800 Sobic003G387800 Sobic003G387800 Sobic010G160700--Sobic003G387800 Sobic010G005500 Sobic010G005500 Sobic010G160700--Sobic010G005500 Sobic009G140600 Sobic009G140600 Sobic010G160700--Sobic009G140600 Sobic005G194100 Sobic005G194100 Sobic010G160700--Sobic005G194100 Sobic007G225500 Sobic007G225500 Sobic010G160700--Sobic007G225500 Sobic002G051100 Sobic002G051100 Sobic010G160700--Sobic002G051100
Octagon: transcription factors


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