Gene annotation
| Transcriptome id | Sobic.003G029200.1 |
|---|---|
| Synonym | Sb03g002740 |
| Functional annotation | lecithin:cholesterol acyltransferase, putative, expressed |
| UniProt | C5XLU1 |
| Pfam | PF02450 |
| Panther DB | PTHR11440 PTHR11440:SF50 |
| NCBI CDD | KOG2369; Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase |
| KEGG Orthology | K06129; lysophospholipase III |
| Gene Ontology | GO:0008374; O-acyltransferase activity GO:0006629lipid metabolic process |
Orthologs (automatic annotation)
| TAIR | AT1G27480 : alpha/beta-Hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os10g08026.1 : lecithin:cholesterol acyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022966 , Zm00025a022960 |
| Brachypodium | KQK05343 |
| Barley | HORVU4Hr1G066090.1 , HORVU4Hr1G066090.3 , HORVU4Hr1G066090.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.003G029200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G227200 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
| 2 | Sobic.008G116300 | expressed protein | - |
| 3 | Sobic.001G183000 | peptidase M50 family protein, putative, expressed | - |
| 4 | Sobic.004G331700 | aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed | K00811: aspartate aminotransferase, chloroplastic |
| 5 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 6 | Sobic.001G517700 | catalase domain containing protein, expressed | K03781: katE, CAT, catB, catalase |
| 7 | Sobic.005G001700 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 8 | Sobic.001G102800 | expressed protein | - |
| 9 | Sobic.006G207800 | Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed | - |
| 10 | Sobic.006G010900 | expressed protein | - |
| 11 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 12 | Sobic.010G160700 | PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 13 | Sobic.001G098800 | ATP synthase F1, delta subunit family protein, putative, expressed | - |
| 14 | Sobic.004G054400 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 15 | Sobic.007G223500 | expressed protein | - |
| 16 | Sobic.001G391900 | nifU, putative, expressed | - |
| 17 | Sobic.003G387100 | membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed | K03969: phage shock protein A |
| 18 | Sobic.010G214100 | D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed | K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase |
| 19 | Sobic.006G101500 | expressed protein | - |
| 20 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
Gene co-expression network
Octagon: transcription factors
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