Gene annotation
Transcriptome id Sobic.010G079000.1,Sobic.010G079000.2,Sobic.010G079000.3
Synonym Sb10g006850,
Functional annotation Phosphotyrosine protein phosphatases superfamily protein (PubMedID : 26465154)
Phosphotyrosine protein phosphatases superfamily protein (PubMedID : 26465154)
tyrosine phosphatase family protein, putative, expressed
UniProt A0A1W0VRZ2 , A0A1W0VRX1 , C5Z6E3
Pfam PF13350 PF03162
Panther DB PTHR31126 PTHR31126:SF15
NCBI CDD -
KEGG Orthology K18045; SIW14, tyrosine-protein phosphatase SIW14
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05000 : Phosphotyrosine protein phosphatases superfamily protein
RAP-DB (Rice) LOC_Os06g10650.1 : tyrosine phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a049606 , Zm00025a033066 , Zm00025a022259 , Zm00025a042489
Brachypodium KQK19061 , KQK01697
Barley HORVU6Hr1G079650.9 , HORVU6Hr1G079650.8 , HORVU6Hr1G079650.1 , HORVU6Hr1G079650.3 , HORVU6Hr1G079650.2 , HORVU6Hr1G079650.5 , HORVU6Hr1G079650.4 , HORVU6Hr1G079650.7 , HORVU7Hr1G035320.1 , HORVU7Hr1G035320.2 , HORVU7Hr1G035320.3
Wheat TraesCS7B02G073200 , TraesCS6D02G305600 , TraesCS6A02G325900 , TraesCS6A02G325900 , TraesCS6A02G325900 , TraesCS7A02G168400 , TraesCS7D02G169300
Populus -


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cDNA sequences
Sobic.010G079000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
2 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
3 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
4 Sobic.001G102800 expressed protein -
5 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
6 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
7 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
8 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
9 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
10 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
11 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
12 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.003G398800 expressed protein -
14 Sobic.010G201700 GA16396-PA, putative, expressed -
15 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
16 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
17 Sobic.007G225500 expressed protein -
18 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
19 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
20 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic010G079000 Sobic010G079000 Sobic009G237100 Sobic009G237100 Sobic010G079000--Sobic009G237100 Sobic001G519800 Sobic001G519800 Sobic010G079000--Sobic001G519800 Sobic001G100000 Sobic001G100000 Sobic010G079000--Sobic001G100000 Sobic001G102800 Sobic001G102800 Sobic010G079000--Sobic001G102800 Sobic003G431700 Sobic003G431700 Sobic010G079000--Sobic003G431700 Sobic001G491000 Sobic001G491000 Sobic010G079000--Sobic001G491000 Sobic002G051100 Sobic002G051100 Sobic010G079000--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic010G079000--Sobic003G002300 Sobic006G207800 Sobic006G207800 Sobic010G079000--Sobic006G207800 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic006G238200 Sobic006G238200 Sobic009G237100--Sobic006G238200 Sobic009G237100--Sobic001G100000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic010G035400 Sobic010G035400 Sobic009G237100--Sobic010G035400 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300 Sobic004G272100 Sobic004G272100 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic001G519800--Sobic010G201700 Sobic004G308700 Sobic004G308700 Sobic001G519800--Sobic004G308700 Sobic007G004800 Sobic007G004800 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic001G100000--Sobic001G491000 Sobic001G100000--Sobic006G238200 Sobic001G100000--Sobic009G237100 Sobic001G100000--Sobic002G275300 Sobic001G100000--Sobic006G207800 Sobic001G100000--Sobic010G201700 Sobic001G100000--Sobic010G181300 Sobic001G289500 Sobic001G289500 Sobic001G100000--Sobic001G289500 Sobic001G100000--Sobic004G272100 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic009G043000 Sobic009G043000 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic001G102800--Sobic007G009200 Sobic007G052400 Sobic007G052400 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic003G431700--Sobic001G519800 Sobic003G398800 Sobic003G398800 Sobic003G431700--Sobic003G398800 Sobic003G431700--Sobic006G207800 Sobic002G370600 Sobic002G370600 Sobic003G431700--Sobic002G370600 Sobic003G431700--Sobic006G238200 Sobic003G431700--Sobic004G308700 Sobic003G431700--Sobic004G272100 Sobic003G431700--Sobic010G181300 Sobic003G431700--Sobic001G102800 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic009G129300 Sobic009G129300 Sobic001G491000--Sobic009G129300 Sobic001G491000--Sobic002G370600 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic002G051100--Sobic003G002300 Sobic002G051100--Sobic001G519800 Sobic002G051100--Sobic004G272100 Sobic008G102000 Sobic008G102000 Sobic002G051100--Sobic008G102000 Sobic001G489000 Sobic001G489000 Sobic002G051100--Sobic001G489000 Sobic009G140600 Sobic009G140600 Sobic002G051100--Sobic009G140600 Sobic002G051100--Sobic010G201700 Sobic003G387800 Sobic003G387800 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800 Sobic003G002300--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic010G005500 Sobic010G005500 Sobic003G002300--Sobic010G005500 Sobic006G207800--Sobic001G102800 Sobic006G207800--Sobic009G237100 Sobic006G207800--Sobic007G009200 Sobic003G387100 Sobic003G387100 Sobic006G207800--Sobic003G387100 Sobic006G207800--Sobic009G043000 Sobic006G207800--Sobic010G035400 Sobic006G207800--Sobic003G431700 Sobic006G207800--Sobic010G201700 Sobic006G207800--Sobic006G238200
Octagon: transcription factors


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