Gene annotation
Transcriptome id Sobic.001G185800.1
Synonym Sb01g016140
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5WUC8
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF134
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G21690 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g37411.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032299 , Zm00025a017378 , Zm00025a014789
Brachypodium KQK14356 , PNT75015 , KQK15995 , KQK15996 , PNT75014
Barley HORVU1Hr1G007910.10 , HORVU1Hr1G007910.1 , HORVU1Hr1G007910.2 , HORVU1Hr1G007910.3 , HORVU1Hr1G007910.4 , HORVU1Hr1G007910.5 , HORVU1Hr1G007910.6 , HORVU1Hr1G007910.7 , HORVU1Hr1G007910.8 , HORVU1Hr1G007910.9 , HORVU5Hr1G082890.3 , HORVU5Hr1G082890.10 , HORVU5Hr1G082890.11 , HORVU5Hr1G082890.9 , HORVU5Hr1G082890.2 , HORVU5Hr1G082890.1 , HORVU5Hr1G082890.6 , HORVU5Hr1G082890.7 , HORVU5Hr1G082890.5
Wheat TraesCS5D02G332300 , TraesCS1B02G037000 , TraesCS5A02G326300 , TraesCS5A02G326300 , TraesCS5A02G326300 , TraesCS5A02G326300 , TraesCS1A02G029900 , TraesCS3B02G485100 , TraesCS5B02G326600 , TraesCS3B02G562500
Populus -


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cDNA sequences
Sobic.001G185800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G259001 - -
2 Sobic.001G302200 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.004G130600 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
4 Sobic.010G254300 Myb-like DNA-binding domain containing protein, putative, expressed -
5 Sobic.001G071800 glucose-6-phosphate isomerase, putative, expressed K01810: GPI, glucose-6-phosphate isomerase
6 Sobic.003G229600 siroheme synthase, putative, expressed -
7 Sobic.004G165500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G317500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
9 Sobic.001G043000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
10 Sobic.001G292700 crcB-like protein, expressed -
11 Sobic.004G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
12 Sobic.001G265700 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
14 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.001G142800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
16 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
17 Sobic.003G277600 DNAse I-like superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.001G221800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
19 Sobic.001G425150 - -
20 Sobic.001G451500 Cytosolic glutamine synthase1.4(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase


Gene co-expression network
sample Sobic001G185800 Sobic001G185800 Sobic010G259001 Sobic010G259001 Sobic001G185800--Sobic010G259001 Sobic001G302200 Sobic001G302200 Sobic001G185800--Sobic001G302200 Sobic004G130600 Sobic004G130600 Sobic001G185800--Sobic004G130600 Sobic010G254300 Sobic010G254300 Sobic001G185800--Sobic010G254300 Sobic001G071800 Sobic001G071800 Sobic001G185800--Sobic001G071800 Sobic003G229600 Sobic003G229600 Sobic001G185800--Sobic003G229600 Sobic004G165500 Sobic004G165500 Sobic001G185800--Sobic004G165500 Sobic004G317500 Sobic004G317500 Sobic001G185800--Sobic004G317500 Sobic001G043000 Sobic001G043000 Sobic001G185800--Sobic001G043000 Sobic010G259001--Sobic004G165500 Sobic001G263100 Sobic001G263100 Sobic010G259001--Sobic001G263100 Sobic010G259001--Sobic001G043000 Sobic009G256100 Sobic009G256100 Sobic010G259001--Sobic009G256100 Sobic001G073300 Sobic001G073300 Sobic010G259001--Sobic001G073300 Sobic001G244600 Sobic001G244600 Sobic010G259001--Sobic001G244600 Sobic003G139500 Sobic003G139500 Sobic010G259001--Sobic003G139500 Sobic002G162400 Sobic002G162400 Sobic010G259001--Sobic002G162400 Sobic003G277600 Sobic003G277600 Sobic010G259001--Sobic003G277600 Sobic004G136600 Sobic004G136600 Sobic001G302200--Sobic004G136600 Sobic003G243600 Sobic003G243600 Sobic001G302200--Sobic003G243600 Sobic002G339600 Sobic002G339600 Sobic001G302200--Sobic002G339600 Sobic003G349200 Sobic003G349200 Sobic001G302200--Sobic003G349200 Sobic007G033800 Sobic007G033800 Sobic001G302200--Sobic007G033800 Sobic001G302200--Sobic004G317500 Sobic001G302200--Sobic003G277600 Sobic003G266500 Sobic003G266500 Sobic001G302200--Sobic003G266500 Sobic010G023700 Sobic010G023700 Sobic001G302200--Sobic010G023700 Sobic010G104800 Sobic010G104800 Sobic004G130600--Sobic010G104800 Sobic004G130600--Sobic001G073300 Sobic004G130600--Sobic001G043000 Sobic004G130600--Sobic001G244600 Sobic004G130600--Sobic009G256100 Sobic002G390100 Sobic002G390100 Sobic004G130600--Sobic002G390100 Sobic004G323800 Sobic004G323800 Sobic004G130600--Sobic004G323800 Sobic006G161500 Sobic006G161500 Sobic004G130600--Sobic006G161500 Sobic003G355200 Sobic003G355200 Sobic004G130600--Sobic003G355200 Sobic010G254300--Sobic004G165500 Sobic001G540300 Sobic001G540300 Sobic010G254300--Sobic001G540300 Sobic010G254300--Sobic009G256100 Sobic010G254300--Sobic004G317500 Sobic010G254300--Sobic002G390100 Sobic010G249700 Sobic010G249700 Sobic010G254300--Sobic010G249700 Sobic001G446100 Sobic001G446100 Sobic010G254300--Sobic001G446100 Sobic010G254300--Sobic001G043000 Sobic010G254300--Sobic001G073300 Sobic001G071800--Sobic007G033800 Sobic003G214500 Sobic003G214500 Sobic001G071800--Sobic003G214500 Sobic001G292700 Sobic001G292700 Sobic001G071800--Sobic001G292700 Sobic010G027000 Sobic010G027000 Sobic001G071800--Sobic010G027000 Sobic005G033200 Sobic005G033200 Sobic001G071800--Sobic005G033200 Sobic002G358800 Sobic002G358800 Sobic001G071800--Sobic002G358800 Sobic006G254100 Sobic006G254100 Sobic001G071800--Sobic006G254100 Sobic001G460600 Sobic001G460600 Sobic001G071800--Sobic001G460600 Sobic002G358400 Sobic002G358400 Sobic001G071800--Sobic002G358400 Sobic004G309300 Sobic004G309300 Sobic003G229600--Sobic004G309300 Sobic003G029200 Sobic003G029200 Sobic003G229600--Sobic003G029200 Sobic007G153900 Sobic007G153900 Sobic003G229600--Sobic007G153900 Sobic006G143100 Sobic006G143100 Sobic003G229600--Sobic006G143100 Sobic003G229600--Sobic001G302200 Sobic001G011700 Sobic001G011700 Sobic003G229600--Sobic001G011700 Sobic001G521200 Sobic001G521200 Sobic003G229600--Sobic001G521200 Sobic006G168650 Sobic006G168650 Sobic003G229600--Sobic006G168650 Sobic010G160700 Sobic010G160700 Sobic003G229600--Sobic010G160700 Sobic003G042900 Sobic003G042900 Sobic004G165500--Sobic003G042900 Sobic004G165500--Sobic001G073300 Sobic004G165500--Sobic002G390100 Sobic004G165500--Sobic009G256100 Sobic007G105500 Sobic007G105500 Sobic004G165500--Sobic007G105500 Sobic006G093100 Sobic006G093100 Sobic004G165500--Sobic006G093100 Sobic002G404800 Sobic002G404800 Sobic004G165500--Sobic002G404800 Sobic004G215800 Sobic004G215800 Sobic004G165500--Sobic004G215800 Sobic004G165500--Sobic010G104800 Sobic006G120500 Sobic006G120500 Sobic004G317500--Sobic006G120500 Sobic010G251700 Sobic010G251700 Sobic004G317500--Sobic010G251700 Sobic006G064100 Sobic006G064100 Sobic004G317500--Sobic006G064100 Sobic004G027600 Sobic004G027600 Sobic004G317500--Sobic004G027600 Sobic008G047000 Sobic008G047000 Sobic004G317500--Sobic008G047000 Sobic002G324500 Sobic002G324500 Sobic004G317500--Sobic002G324500 Sobic002G403600 Sobic002G403600 Sobic004G317500--Sobic002G403600 Sobic004G112100 Sobic004G112100 Sobic004G317500--Sobic004G112100 Sobic004G317500--Sobic002G404800 Sobic006G153400 Sobic006G153400 Sobic001G043000--Sobic006G153400 Sobic001G043000--Sobic003G139500 Sobic001G043000--Sobic010G104800 Sobic001G043000--Sobic001G073300 Sobic001G043000--Sobic009G256100 Sobic001G043000--Sobic010G249700 Sobic004G035900 Sobic004G035900 Sobic001G043000--Sobic004G035900 Sobic003G127800 Sobic003G127800 Sobic001G043000--Sobic003G127800 Sobic010G039500 Sobic010G039500 Sobic001G043000--Sobic010G039500
Octagon: transcription factors


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