Gene annotation
Transcriptome id Sobic.001G043000.1
Synonym Sb01g003960
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
short-chain dehydrogenase/reductase, putative, expressed
UniProt C5WW14
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF358
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G61220 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g44980.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a016492
Brachypodium -
Barley HORVU1Hr1G064390.1 , HORVU1Hr1G064390.2
Wheat TraesCS7A02G111500 , TraesCS2B02G388600 , TraesCS7A02G114100 , TraesCS2A02G371100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
2 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
3 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
4 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
5 Sobic.009G256100 expressed protein -
6 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G035900 expressed protein -
8 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G039500 genetic modifier, putative, expressed -
10 Sobic.003G005000 expressed protein -
11 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
12 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
13 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
14 Sobic.010G188300 fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
15 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
16 Sobic.001G292700 crcB-like protein, expressed -
17 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
18 Sobic.003G277600 DNAse I-like superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.007G006400 - -
20 Sobic.003G409700 rieske domain containing protein, expressed -


Gene co-expression network
sample Sobic001G043000 Sobic001G043000 Sobic006G153400 Sobic006G153400 Sobic001G043000--Sobic006G153400 Sobic003G139500 Sobic003G139500 Sobic001G043000--Sobic003G139500 Sobic010G104800 Sobic010G104800 Sobic001G043000--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic001G043000--Sobic001G073300 Sobic009G256100 Sobic009G256100 Sobic001G043000--Sobic009G256100 Sobic010G249700 Sobic010G249700 Sobic001G043000--Sobic010G249700 Sobic004G035900 Sobic004G035900 Sobic001G043000--Sobic004G035900 Sobic003G127800 Sobic003G127800 Sobic001G043000--Sobic003G127800 Sobic010G039500 Sobic010G039500 Sobic001G043000--Sobic010G039500 Sobic006G153400--Sobic010G104800 Sobic006G153400--Sobic009G256100 Sobic007G006400 Sobic007G006400 Sobic006G153400--Sobic007G006400 Sobic004G112100 Sobic004G112100 Sobic006G153400--Sobic004G112100 Sobic006G153400--Sobic003G127800 Sobic001G244600 Sobic001G244600 Sobic006G153400--Sobic001G244600 Sobic004G082300 Sobic004G082300 Sobic006G153400--Sobic004G082300 Sobic004G059800 Sobic004G059800 Sobic006G153400--Sobic004G059800 Sobic005G101200 Sobic005G101200 Sobic006G153400--Sobic005G101200 Sobic001G263100 Sobic001G263100 Sobic003G139500--Sobic001G263100 Sobic004G322700 Sobic004G322700 Sobic003G139500--Sobic004G322700 Sobic006G161500 Sobic006G161500 Sobic003G139500--Sobic006G161500 Sobic004G322600 Sobic004G322600 Sobic003G139500--Sobic004G322600 Sobic003G139500--Sobic010G104800 Sobic002G162400 Sobic002G162400 Sobic003G139500--Sobic002G162400 Sobic008G038500 Sobic008G038500 Sobic003G139500--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic003G139500--Sobic001G331600 Sobic003G139500--Sobic001G043000 Sobic010G104800--Sobic001G073300 Sobic010G104800--Sobic006G153400 Sobic010G104800--Sobic009G256100 Sobic010G104800--Sobic007G006400 Sobic008G129900 Sobic008G129900 Sobic010G104800--Sobic008G129900 Sobic010G104800--Sobic004G112100 Sobic010G104800--Sobic001G244600 Sobic010G104800--Sobic006G161500 Sobic002G390100 Sobic002G390100 Sobic010G104800--Sobic002G390100 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic003G409700 Sobic003G409700 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic010G231300 Sobic010G231300 Sobic001G073300--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic007G105500 Sobic007G105500 Sobic009G256100--Sobic007G105500 Sobic002G404800 Sobic002G404800 Sobic009G256100--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic009G256100--Sobic003G185900 Sobic004G215800 Sobic004G215800 Sobic009G256100--Sobic004G215800 Sobic009G256100--Sobic008G129900 Sobic001G017300 Sobic001G017300 Sobic010G249700--Sobic001G017300 Sobic010G249700--Sobic005G101200 Sobic010G249700--Sobic007G105500 Sobic006G093800 Sobic006G093800 Sobic010G249700--Sobic006G093800 Sobic010G249700--Sobic009G256100 Sobic010G255300 Sobic010G255300 Sobic010G249700--Sobic010G255300 Sobic003G282000 Sobic003G282000 Sobic010G249700--Sobic003G282000 Sobic002G382700 Sobic002G382700 Sobic010G249700--Sobic002G382700 Sobic004G356400 Sobic004G356400 Sobic010G249700--Sobic004G356400 Sobic003G005000 Sobic003G005000 Sobic004G035900--Sobic003G005000 Sobic001G283100 Sobic001G283100 Sobic004G035900--Sobic001G283100 Sobic001G485100 Sobic001G485100 Sobic004G035900--Sobic001G485100 Sobic003G003450 Sobic003G003450 Sobic004G035900--Sobic003G003450 Sobic004G035900--Sobic001G331600 Sobic007G157300 Sobic007G157300 Sobic004G035900--Sobic007G157300 Sobic008G149100 Sobic008G149100 Sobic004G035900--Sobic008G149100 Sobic001G015200 Sobic001G015200 Sobic004G035900--Sobic001G015200 Sobic003G228300 Sobic003G228300 Sobic004G035900--Sobic003G228300 Sobic007G161500 Sobic007G161500 Sobic003G127800--Sobic007G161500 Sobic003G127800--Sobic004G059800 Sobic003G127800--Sobic010G039500 Sobic001G491000 Sobic001G491000 Sobic003G127800--Sobic001G491000 Sobic009G129300 Sobic009G129300 Sobic003G127800--Sobic009G129300 Sobic005G056400 Sobic005G056400 Sobic003G127800--Sobic005G056400 Sobic001G329400 Sobic001G329400 Sobic003G127800--Sobic001G329400 Sobic003G367500 Sobic003G367500 Sobic003G127800--Sobic003G367500 Sobic003G127800--Sobic006G153400 Sobic010G039500--Sobic003G127800 Sobic010G039500--Sobic003G005000 Sobic010G039500--Sobic003G367500 Sobic003G398800 Sobic003G398800 Sobic010G039500--Sobic003G398800 Sobic005G101300 Sobic005G101300 Sobic010G039500--Sobic005G101300 Sobic003G024300 Sobic003G024300 Sobic010G039500--Sobic003G024300 Sobic010G039500--Sobic007G161500 Sobic010G039500--Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic010G039500--Sobic006G238200
Octagon: transcription factors


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