Gene annotation
Transcriptome id Sobic.003G277600.1
Synonym Sb03g032940
Functional annotation DNAse I-like superfamily protein (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt C5XIB3
Pfam PF03372
Panther DB PTHR11200 PTHR11200:SF128
NCBI CDD KOG0565; Inositol polyphosphate 5-phosphatase and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71710 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os01g51890.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044355 , Zm00025a027781
Brachypodium KQK09483 , KQK09484
Barley HORVU3Hr1G067840.4 , HORVU3Hr1G067840.2 , HORVU3Hr1G067840.3 , HORVU3Hr1G067840.1
Wheat TraesCS3A02G244500 , TraesCS3B02G275500 , TraesCS3B02G275500 , TraesCS3D02G246900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G277600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
2 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.004G165500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
5 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
6 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
7 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
8 Sobic.001G043000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
9 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
10 Sobic.007G006400 - -
11 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
12 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
13 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
14 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
15 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G059800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT1@3 - Na+ transporter, expressed -
17 Sobic.009G256100 expressed protein -
18 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
19 Sobic.004G322700 - -
20 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -


Gene co-expression network
sample Sobic003G277600 Sobic003G277600 Sobic003G372400 Sobic003G372400 Sobic003G277600--Sobic003G372400 Sobic009G246300 Sobic009G246300 Sobic003G277600--Sobic009G246300 Sobic004G165500 Sobic004G165500 Sobic003G277600--Sobic004G165500 Sobic010G104800 Sobic010G104800 Sobic003G277600--Sobic010G104800 Sobic009G048900 Sobic009G048900 Sobic003G277600--Sobic009G048900 Sobic004G112100 Sobic004G112100 Sobic003G277600--Sobic004G112100 Sobic003G139500 Sobic003G139500 Sobic003G277600--Sobic003G139500 Sobic001G043000 Sobic001G043000 Sobic003G277600--Sobic001G043000 Sobic003G042900 Sobic003G042900 Sobic003G277600--Sobic003G042900 Sobic004G215800 Sobic004G215800 Sobic003G372400--Sobic004G215800 Sobic002G056500 Sobic002G056500 Sobic003G372400--Sobic002G056500 Sobic005G231500 Sobic005G231500 Sobic003G372400--Sobic005G231500 Sobic003G097600 Sobic003G097600 Sobic003G372400--Sobic003G097600 Sobic007G105500 Sobic007G105500 Sobic003G372400--Sobic007G105500 Sobic003G314000 Sobic003G314000 Sobic003G372400--Sobic003G314000 Sobic006G093100 Sobic006G093100 Sobic003G372400--Sobic006G093100 Sobic008G129900 Sobic008G129900 Sobic003G372400--Sobic008G129900 Sobic003G371250 Sobic003G371250 Sobic003G372400--Sobic003G371250 Sobic004G322700 Sobic004G322700 Sobic009G246300--Sobic004G322700 Sobic001G221800 Sobic001G221800 Sobic009G246300--Sobic001G221800 Sobic009G246300--Sobic003G139500 Sobic009G246300--Sobic003G277600 Sobic004G322600 Sobic004G322600 Sobic009G246300--Sobic004G322600 Sobic009G016000 Sobic009G016000 Sobic009G246300--Sobic009G016000 Sobic001G073300 Sobic001G073300 Sobic009G246300--Sobic001G073300 Sobic001G244600 Sobic001G244600 Sobic009G246300--Sobic001G244600 Sobic001G244700 Sobic001G244700 Sobic009G246300--Sobic001G244700 Sobic004G165500--Sobic003G042900 Sobic004G165500--Sobic001G073300 Sobic002G390100 Sobic002G390100 Sobic004G165500--Sobic002G390100 Sobic009G256100 Sobic009G256100 Sobic004G165500--Sobic009G256100 Sobic004G165500--Sobic007G105500 Sobic004G165500--Sobic006G093100 Sobic002G404800 Sobic002G404800 Sobic004G165500--Sobic002G404800 Sobic004G165500--Sobic004G215800 Sobic004G165500--Sobic010G104800 Sobic010G104800--Sobic001G073300 Sobic006G153400 Sobic006G153400 Sobic010G104800--Sobic006G153400 Sobic010G104800--Sobic009G256100 Sobic007G006400 Sobic007G006400 Sobic010G104800--Sobic007G006400 Sobic010G104800--Sobic008G129900 Sobic010G104800--Sobic004G112100 Sobic010G104800--Sobic001G244600 Sobic006G161500 Sobic006G161500 Sobic010G104800--Sobic006G161500 Sobic010G104800--Sobic002G390100 Sobic009G048900--Sobic004G112100 Sobic006G244000 Sobic006G244000 Sobic009G048900--Sobic006G244000 Sobic009G048900--Sobic006G153400 Sobic009G048900--Sobic010G104800 Sobic006G057866 Sobic006G057866 Sobic009G048900--Sobic006G057866 Sobic001G446100 Sobic001G446100 Sobic009G048900--Sobic001G446100 Sobic003G127800 Sobic003G127800 Sobic009G048900--Sobic003G127800 Sobic009G048900--Sobic004G215800 Sobic001G540300 Sobic001G540300 Sobic009G048900--Sobic001G540300 Sobic004G112100--Sobic006G153400 Sobic004G112100--Sobic009G048900 Sobic004G112100--Sobic010G104800 Sobic004G112100--Sobic004G215800 Sobic004G112100--Sobic009G256100 Sobic004G112100--Sobic003G097600 Sobic004G112100--Sobic002G404800 Sobic004G112100--Sobic007G006400 Sobic004G027600 Sobic004G027600 Sobic004G112100--Sobic004G027600 Sobic001G263100 Sobic001G263100 Sobic003G139500--Sobic001G263100 Sobic003G139500--Sobic004G322700 Sobic003G139500--Sobic006G161500 Sobic003G139500--Sobic004G322600 Sobic003G139500--Sobic010G104800 Sobic002G162400 Sobic002G162400 Sobic003G139500--Sobic002G162400 Sobic008G038500 Sobic008G038500 Sobic003G139500--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic003G139500--Sobic001G331600 Sobic003G139500--Sobic001G043000 Sobic001G043000--Sobic006G153400 Sobic001G043000--Sobic003G139500 Sobic001G043000--Sobic010G104800 Sobic001G043000--Sobic001G073300 Sobic001G043000--Sobic009G256100 Sobic010G249700 Sobic010G249700 Sobic001G043000--Sobic010G249700 Sobic004G035900 Sobic004G035900 Sobic001G043000--Sobic004G035900 Sobic001G043000--Sobic003G127800 Sobic010G039500 Sobic010G039500 Sobic001G043000--Sobic010G039500 Sobic003G042900--Sobic002G404800 Sobic003G042900--Sobic002G390100 Sobic003G042900--Sobic001G073300 Sobic003G042900--Sobic009G256100 Sobic003G042900--Sobic004G165500 Sobic003G042900--Sobic010G104800 Sobic003G042900--Sobic004G215800 Sobic008G033000 Sobic008G033000 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.