Gene annotation
Transcriptome id Sobic.006G254100.1,Sobic.006G254100.2
Synonym Sb06g031800
Functional annotation GTP cyclohydrolase I 1, putative, expressed
UniProt A0A1B6PNW7 , A0A1B6PNW1
Pfam PF01227
Panther DB PTHR11109 PTHR11109:SF0
NCBI CDD KOG2698; GTP cyclohydrolase I
KEGG Orthology K01495; GCH1, GTP cyclohydrolase IA
Gene Ontology GO:0005737; cytoplasm GO:0003934GTP cyclohydrolase I activity


Orthologs (automatic annotation)
TAIR AT3G07270 : GTP cyclohydrolase I
RAP-DB (Rice) LOC_Os04g56710.1 : GTP cyclohydrolase I 1, putative, expressed
MaizeGDB (Corn) Zm00025a057301 , Zm00025a009422
Brachypodium KQJ85135
Barley HORVU2Hr1G109980.4 , HORVU2Hr1G109980.1 , HORVU2Hr1G109980.3
Wheat TraesCS2B02G521000 , TraesCS2A02G492900 , TraesCS2A02G492900 , TraesCS2D02G493100 , TraesCS2D02G493100
Populus -


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cDNA sequences
Sobic.006G254100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G214500 ubiquitin-like protein SMT3, putative, expressed -
2 Sobic.001G473300 stage II sporulation protein E, putative, expressed -
3 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
4 Sobic.003G355200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
5 Sobic.003G370900 expressed protein -
6 Sobic.009G229200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
7 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
9 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
10 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
11 Sobic.007G207400 Ser/Thr protein phosphatase family protein, putative, expressed K04460: serine/threonine-protein phosphatase 5
12 Sobic.001G106700 expressed protein -
13 Sobic.003G117900 protein kinase, putative, expressed -
14 Sobic.001G460600 RING zinc finger protein-like, putative, expressed -
15 Sobic.001G221800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
16 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
17 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
18 Sobic.001G071800 glucose-6-phosphate isomerase, putative, expressed K01810: GPI, glucose-6-phosphate isomerase
19 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.010G074300 smr domain containing protein, expressed -


Gene co-expression network
sample Sobic006G254100 Sobic006G254100 Sobic003G214500 Sobic003G214500 Sobic006G254100--Sobic003G214500 Sobic001G473300 Sobic001G473300 Sobic006G254100--Sobic001G473300 Sobic004G235000 Sobic004G235000 Sobic006G254100--Sobic004G235000 Sobic003G355200 Sobic003G355200 Sobic006G254100--Sobic003G355200 Sobic003G370900 Sobic003G370900 Sobic006G254100--Sobic003G370900 Sobic009G229200 Sobic009G229200 Sobic006G254100--Sobic009G229200 Sobic003G243600 Sobic003G243600 Sobic006G254100--Sobic003G243600 Sobic009G084000 Sobic009G084000 Sobic006G254100--Sobic009G084000 Sobic003G264200 Sobic003G264200 Sobic006G254100--Sobic003G264200 Sobic003G214500--Sobic004G235000 Sobic003G214500--Sobic006G254100 Sobic003G214500--Sobic009G084000 Sobic003G220800 Sobic003G220800 Sobic003G214500--Sobic003G220800 Sobic003G117900 Sobic003G117900 Sobic003G214500--Sobic003G117900 Sobic001G071800 Sobic001G071800 Sobic003G214500--Sobic001G071800 Sobic002G111200 Sobic002G111200 Sobic003G214500--Sobic002G111200 Sobic001G014800 Sobic001G014800 Sobic003G214500--Sobic001G014800 Sobic007G033800 Sobic007G033800 Sobic003G214500--Sobic007G033800 Sobic001G473300--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic001G473300--Sobic001G106700 Sobic001G473300--Sobic006G254100 Sobic004G118200 Sobic004G118200 Sobic001G473300--Sobic004G118200 Sobic001G181700 Sobic001G181700 Sobic001G473300--Sobic001G181700 Sobic010G074300 Sobic010G074300 Sobic001G473300--Sobic010G074300 Sobic006G092400 Sobic006G092400 Sobic001G473300--Sobic006G092400 Sobic001G473300--Sobic003G117900 Sobic001G473300--Sobic004G235000 Sobic009G222500 Sobic009G222500 Sobic004G235000--Sobic009G222500 Sobic004G235000--Sobic006G092400 Sobic004G235000--Sobic003G214500 Sobic004G235000--Sobic003G220800 Sobic010G027600 Sobic010G027600 Sobic004G235000--Sobic010G027600 Sobic001G007200 Sobic001G007200 Sobic004G235000--Sobic001G007200 Sobic003G012200 Sobic003G012200 Sobic004G235000--Sobic003G012200 Sobic004G086600 Sobic004G086600 Sobic004G235000--Sobic004G086600 Sobic004G235000--Sobic009G084000 Sobic001G221800 Sobic001G221800 Sobic003G355200--Sobic001G221800 Sobic006G214300 Sobic006G214300 Sobic003G355200--Sobic006G214300 Sobic003G139500 Sobic003G139500 Sobic003G355200--Sobic003G139500 Sobic008G096700 Sobic008G096700 Sobic003G355200--Sobic008G096700 Sobic003G282000 Sobic003G282000 Sobic003G355200--Sobic003G282000 Sobic009G194500 Sobic009G194500 Sobic003G355200--Sobic009G194500 Sobic009G038900 Sobic009G038900 Sobic003G355200--Sobic009G038900 Sobic003G314000 Sobic003G314000 Sobic003G355200--Sobic003G314000 Sobic002G196600 Sobic002G196600 Sobic003G355200--Sobic002G196600 Sobic003G370900--Sobic001G106700 Sobic003G370900--Sobic001G473300 Sobic003G370900--Sobic003G117900 Sobic003G370900--Sobic001G181700 Sobic001G460600 Sobic001G460600 Sobic003G370900--Sobic001G460600 Sobic007G058700 Sobic007G058700 Sobic003G370900--Sobic007G058700 Sobic003G370900--Sobic004G235000 Sobic003G370900--Sobic001G007200 Sobic009G165800 Sobic009G165800 Sobic003G370900--Sobic009G165800 Sobic002G134001 Sobic002G134001 Sobic009G229200--Sobic002G134001 Sobic004G203400 Sobic004G203400 Sobic009G229200--Sobic004G203400 Sobic009G229200--Sobic003G264200 Sobic009G229200--Sobic009G165800 Sobic001G391600 Sobic001G391600 Sobic009G229200--Sobic001G391600 Sobic009G005900 Sobic009G005900 Sobic009G229200--Sobic009G005900 Sobic004G130100 Sobic004G130100 Sobic009G229200--Sobic004G130100 Sobic003G010400 Sobic003G010400 Sobic009G229200--Sobic003G010400 Sobic009G174900 Sobic009G174900 Sobic009G229200--Sobic009G174900 Sobic001G070000 Sobic001G070000 Sobic003G243600--Sobic001G070000 Sobic003G243600--Sobic007G033800 Sobic004G136600 Sobic004G136600 Sobic003G243600--Sobic004G136600 Sobic001G339500 Sobic001G339500 Sobic003G243600--Sobic001G339500 Sobic003G243600--Sobic003G214500 Sobic010G027000 Sobic010G027000 Sobic003G243600--Sobic010G027000 Sobic003G243600--Sobic006G254100 Sobic001G302200 Sobic001G302200 Sobic003G243600--Sobic001G302200 Sobic003G350800 Sobic003G350800 Sobic003G243600--Sobic003G350800 Sobic009G084000--Sobic003G220800 Sobic010G131900 Sobic010G131900 Sobic009G084000--Sobic010G131900 Sobic009G084000--Sobic001G014800 Sobic004G206700 Sobic004G206700 Sobic009G084000--Sobic004G206700 Sobic004G054100 Sobic004G054100 Sobic009G084000--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic009G084000--Sobic002G047700 Sobic002G263600 Sobic002G263600 Sobic009G084000--Sobic002G263600 Sobic009G084000--Sobic003G214500 Sobic009G084000--Sobic009G222500 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic001G080700 Sobic001G080700 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic003G264200--Sobic006G049700 Sobic006G101700 Sobic006G101700 Sobic003G264200--Sobic006G101700 Sobic003G264200--Sobic002G047700 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100
Octagon: transcription factors


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