Gene annotation
Transcriptome id Sobic.003G214500.1
Synonym Sb03g027375
Functional annotation ubiquitin-like protein SMT3, putative, expressed
UniProt A0A1B6Q4L3
Pfam PF11976
Panther DB PTHR10562 PTHR10562:SF15
NCBI CDD KOG1769; Ubiquitin-like proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68185 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os07g38690.1 : ubiquitin-like protein SMT3, putative, expressed
MaizeGDB (Corn) Zm00025a038471
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
2 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
3 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
4 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
5 Sobic.003G117900 protein kinase, putative, expressed -
6 Sobic.001G071800 glucose-6-phosphate isomerase, putative, expressed K01810: GPI, glucose-6-phosphate isomerase
7 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
8 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
9 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
10 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5
11 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
12 Sobic.006G092400 calmodulin binding protein, putative, expressed -
13 Sobic.001G460600 RING zinc finger protein-like, putative, expressed -
14 Sobic.003G370900 expressed protein -
15 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
17 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
18 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
19 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
20 Sobic.009G222500 expressed protein -


Gene co-expression network
sample Sobic003G214500 Sobic003G214500 Sobic004G235000 Sobic004G235000 Sobic003G214500--Sobic004G235000 Sobic006G254100 Sobic006G254100 Sobic003G214500--Sobic006G254100 Sobic009G084000 Sobic009G084000 Sobic003G214500--Sobic009G084000 Sobic003G220800 Sobic003G220800 Sobic003G214500--Sobic003G220800 Sobic003G117900 Sobic003G117900 Sobic003G214500--Sobic003G117900 Sobic001G071800 Sobic001G071800 Sobic003G214500--Sobic001G071800 Sobic002G111200 Sobic002G111200 Sobic003G214500--Sobic002G111200 Sobic001G014800 Sobic001G014800 Sobic003G214500--Sobic001G014800 Sobic007G033800 Sobic007G033800 Sobic003G214500--Sobic007G033800 Sobic009G222500 Sobic009G222500 Sobic004G235000--Sobic009G222500 Sobic006G092400 Sobic006G092400 Sobic004G235000--Sobic006G092400 Sobic004G235000--Sobic003G214500 Sobic004G235000--Sobic003G220800 Sobic010G027600 Sobic010G027600 Sobic004G235000--Sobic010G027600 Sobic001G007200 Sobic001G007200 Sobic004G235000--Sobic001G007200 Sobic003G012200 Sobic003G012200 Sobic004G235000--Sobic003G012200 Sobic004G086600 Sobic004G086600 Sobic004G235000--Sobic004G086600 Sobic004G235000--Sobic009G084000 Sobic006G254100--Sobic003G214500 Sobic001G473300 Sobic001G473300 Sobic006G254100--Sobic001G473300 Sobic006G254100--Sobic004G235000 Sobic003G355200 Sobic003G355200 Sobic006G254100--Sobic003G355200 Sobic003G370900 Sobic003G370900 Sobic006G254100--Sobic003G370900 Sobic009G229200 Sobic009G229200 Sobic006G254100--Sobic009G229200 Sobic003G243600 Sobic003G243600 Sobic006G254100--Sobic003G243600 Sobic006G254100--Sobic009G084000 Sobic003G264200 Sobic003G264200 Sobic006G254100--Sobic003G264200 Sobic009G084000--Sobic003G220800 Sobic010G131900 Sobic010G131900 Sobic009G084000--Sobic010G131900 Sobic009G084000--Sobic001G014800 Sobic004G206700 Sobic004G206700 Sobic009G084000--Sobic004G206700 Sobic004G054100 Sobic004G054100 Sobic009G084000--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic009G084000--Sobic002G047700 Sobic002G263600 Sobic002G263600 Sobic009G084000--Sobic002G263600 Sobic009G084000--Sobic003G214500 Sobic009G084000--Sobic009G222500 Sobic003G220800--Sobic009G084000 Sobic001G100900 Sobic001G100900 Sobic003G220800--Sobic001G100900 Sobic003G043300 Sobic003G043300 Sobic003G220800--Sobic003G043300 Sobic010G074300 Sobic010G074300 Sobic003G220800--Sobic010G074300 Sobic001G241100 Sobic001G241100 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic003G220800--Sobic002G047700 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000 Sobic010G042100 Sobic010G042100 Sobic003G117900--Sobic010G042100 Sobic003G117900--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic003G117900--Sobic001G007200 Sobic004G167400 Sobic004G167400 Sobic003G117900--Sobic004G167400 Sobic004G067100 Sobic004G067100 Sobic003G117900--Sobic004G067100 Sobic002G045300 Sobic002G045300 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic001G071800--Sobic007G033800 Sobic001G071800--Sobic003G214500 Sobic001G292700 Sobic001G292700 Sobic001G071800--Sobic001G292700 Sobic010G027000 Sobic010G027000 Sobic001G071800--Sobic010G027000 Sobic005G033200 Sobic005G033200 Sobic001G071800--Sobic005G033200 Sobic002G358800 Sobic002G358800 Sobic001G071800--Sobic002G358800 Sobic001G071800--Sobic006G254100 Sobic001G460600 Sobic001G460600 Sobic001G071800--Sobic001G460600 Sobic002G358400 Sobic002G358400 Sobic001G071800--Sobic002G358400 Sobic001G339500 Sobic001G339500 Sobic002G111200--Sobic001G339500 Sobic002G111200--Sobic001G014800 Sobic001G219300 Sobic001G219300 Sobic002G111200--Sobic001G219300 Sobic002G339600 Sobic002G339600 Sobic002G111200--Sobic002G339600 Sobic010G277100 Sobic010G277100 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G309900 Sobic002G309900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic009G004600 Sobic009G004600 Sobic002G111200--Sobic009G004600 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic001G014800--Sobic002G263600 Sobic007G033800--Sobic005G033200 Sobic007G033800--Sobic001G339500 Sobic010G023700 Sobic010G023700 Sobic007G033800--Sobic010G023700 Sobic001G031100 Sobic001G031100 Sobic007G033800--Sobic001G031100 Sobic006G173600 Sobic006G173600 Sobic007G033800--Sobic006G173600 Sobic007G033800--Sobic002G339600 Sobic007G033800--Sobic001G071800 Sobic007G033800--Sobic002G111200 Sobic002G421900 Sobic002G421900 Sobic007G033800--Sobic002G421900
Octagon: transcription factors


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