Gene annotation
Transcriptome id Sobic.003G243600.2,Sobic.003G243600.1
Synonym Sb03g030010, UBC9
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A1B6Q546 , A0A1B6Q543
Pfam PF00179
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase KOG0426Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27960 : ubiquitin conjugating enzyme 9
RAP-DB (Rice) LOC_Os01g46926.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a038709 , Zm00025a028180
Brachypodium KQK09019 , KQK09020
Barley HORVU3Hr1G059290.6 , HORVU3Hr1G059290.4 , HORVU3Hr1G059290.5 , HORVU3Hr1G059290.2 , HORVU3Hr1G059290.3 , HORVU3Hr1G059290.1
Wheat TraesCS3B02G266900 , TraesCS3D02G238700 , TraesCS3A02G238400 , TraesCS2B02G570100
Populus PNT30969 , PNT30971 , PNT30970


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cDNA sequences
Sobic.003G243600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
3 Sobic.004G136600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
4 Sobic.001G339500 expressed protein -
5 Sobic.003G214500 ubiquitin-like protein SMT3, putative, expressed -
6 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
7 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
8 Sobic.001G302200 glycosyl transferase 8 domain containing protein, putative, expressed -
9 Sobic.003G350800 SLT1 protein, putative, expressed -
10 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
11 Sobic.002G358800 interferon-related developmental regulator, putative, expressed -
12 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
13 Sobic.009G135900 cysteine proteinase inhibitor precursor protein, putative, expressed -
14 Sobic.001G292700 crcB-like protein, expressed -
15 Sobic.003G117900 protein kinase, putative, expressed -
16 Sobic.003G349200 cation efflux family protein, putative, expressed -
17 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
18 Sobic.005G042800 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
19 Sobic.001G071800 glucose-6-phosphate isomerase, putative, expressed K01810: GPI, glucose-6-phosphate isomerase
20 Sobic.005G104800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G243600 Sobic003G243600 Sobic001G070000 Sobic001G070000 Sobic003G243600--Sobic001G070000 Sobic007G033800 Sobic007G033800 Sobic003G243600--Sobic007G033800 Sobic004G136600 Sobic004G136600 Sobic003G243600--Sobic004G136600 Sobic001G339500 Sobic001G339500 Sobic003G243600--Sobic001G339500 Sobic003G214500 Sobic003G214500 Sobic003G243600--Sobic003G214500 Sobic010G027000 Sobic010G027000 Sobic003G243600--Sobic010G027000 Sobic006G254100 Sobic006G254100 Sobic003G243600--Sobic006G254100 Sobic001G302200 Sobic001G302200 Sobic003G243600--Sobic001G302200 Sobic003G350800 Sobic003G350800 Sobic003G243600--Sobic003G350800 Sobic001G406100 Sobic001G406100 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic005G033200 Sobic005G033200 Sobic007G033800--Sobic005G033200 Sobic007G033800--Sobic001G339500 Sobic010G023700 Sobic010G023700 Sobic007G033800--Sobic010G023700 Sobic001G031100 Sobic001G031100 Sobic007G033800--Sobic001G031100 Sobic006G173600 Sobic006G173600 Sobic007G033800--Sobic006G173600 Sobic002G339600 Sobic002G339600 Sobic007G033800--Sobic002G339600 Sobic001G071800 Sobic001G071800 Sobic007G033800--Sobic001G071800 Sobic002G111200 Sobic002G111200 Sobic007G033800--Sobic002G111200 Sobic002G421900 Sobic002G421900 Sobic007G033800--Sobic002G421900 Sobic004G236300 Sobic004G236300 Sobic004G136600--Sobic004G236300 Sobic004G136600--Sobic003G243600 Sobic004G136600--Sobic001G302200 Sobic003G130800 Sobic003G130800 Sobic004G136600--Sobic003G130800 Sobic006G180200 Sobic006G180200 Sobic004G136600--Sobic006G180200 Sobic002G245400 Sobic002G245400 Sobic004G136600--Sobic002G245400 Sobic003G337000 Sobic003G337000 Sobic004G136600--Sobic003G337000 Sobic002G066400 Sobic002G066400 Sobic004G136600--Sobic002G066400 Sobic002G355300 Sobic002G355300 Sobic004G136600--Sobic002G355300 Sobic001G339500--Sobic002G339600 Sobic001G339500--Sobic002G111200 Sobic003G349200 Sobic003G349200 Sobic001G339500--Sobic003G349200 Sobic006G215600 Sobic006G215600 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic001G339500--Sobic007G033800 Sobic006G011300 Sobic006G011300 Sobic001G339500--Sobic006G011300 Sobic003G224100 Sobic003G224100 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic004G235000 Sobic004G235000 Sobic003G214500--Sobic004G235000 Sobic003G214500--Sobic006G254100 Sobic009G084000 Sobic009G084000 Sobic003G214500--Sobic009G084000 Sobic003G220800 Sobic003G220800 Sobic003G214500--Sobic003G220800 Sobic003G117900 Sobic003G117900 Sobic003G214500--Sobic003G117900 Sobic003G214500--Sobic001G071800 Sobic003G214500--Sobic002G111200 Sobic001G014800 Sobic001G014800 Sobic003G214500--Sobic001G014800 Sobic003G214500--Sobic007G033800 Sobic003G336000 Sobic003G336000 Sobic010G027000--Sobic003G336000 Sobic002G291200 Sobic002G291200 Sobic010G027000--Sobic002G291200 Sobic010G277800 Sobic010G277800 Sobic010G027000--Sobic010G277800 Sobic009G217900 Sobic009G217900 Sobic010G027000--Sobic009G217900 Sobic002G358800 Sobic002G358800 Sobic010G027000--Sobic002G358800 Sobic004G058200 Sobic004G058200 Sobic010G027000--Sobic004G058200 Sobic010G027000--Sobic003G243600 Sobic010G027000--Sobic001G406100 Sobic002G358400 Sobic002G358400 Sobic010G027000--Sobic002G358400 Sobic006G254100--Sobic003G214500 Sobic001G473300 Sobic001G473300 Sobic006G254100--Sobic001G473300 Sobic006G254100--Sobic004G235000 Sobic003G355200 Sobic003G355200 Sobic006G254100--Sobic003G355200 Sobic003G370900 Sobic003G370900 Sobic006G254100--Sobic003G370900 Sobic009G229200 Sobic009G229200 Sobic006G254100--Sobic009G229200 Sobic006G254100--Sobic003G243600 Sobic006G254100--Sobic009G084000 Sobic003G264200 Sobic003G264200 Sobic006G254100--Sobic003G264200 Sobic001G302200--Sobic004G136600 Sobic001G302200--Sobic003G243600 Sobic001G302200--Sobic002G339600 Sobic001G302200--Sobic003G349200 Sobic001G302200--Sobic007G033800 Sobic004G317500 Sobic004G317500 Sobic001G302200--Sobic004G317500 Sobic003G277600 Sobic003G277600 Sobic001G302200--Sobic003G277600 Sobic003G266500 Sobic003G266500 Sobic001G302200--Sobic003G266500 Sobic001G302200--Sobic010G023700 Sobic009G246300 Sobic009G246300 Sobic003G350800--Sobic009G246300 Sobic001G333600 Sobic001G333600 Sobic003G350800--Sobic001G333600 Sobic010G251300 Sobic010G251300 Sobic003G350800--Sobic010G251300 Sobic003G043300 Sobic003G043300 Sobic003G350800--Sobic003G043300 Sobic003G350800--Sobic002G358800 Sobic001G221800 Sobic001G221800 Sobic003G350800--Sobic001G221800 Sobic002G290400 Sobic002G290400 Sobic003G350800--Sobic002G290400 Sobic010G230500 Sobic010G230500 Sobic003G350800--Sobic010G230500 Sobic008G077500 Sobic008G077500 Sobic003G350800--Sobic008G077500
Octagon: transcription factors


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