Gene annotation
Transcriptome id Sobic.005G104800.1
Synonym Sb05g009460, ATMYB54, MYB54
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5Y1Y9
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF496
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17950 : myb domain protein 52
RAP-DB (Rice) LOC_Os11g10130.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a025677 , Zm00025a012707 , Zm00025a029620 , Zm00025a024116 , Zm00025a024118 , Zm00025a035220
Brachypodium KQJ89007 , KQJ98405 , KQK03874
Barley HORVU3Hr1G038700.5 , HORVU3Hr1G038700.4 , HORVU3Hr1G038700.6 , HORVU3Hr1G038700.3 , HORVU3Hr1G038700.2 , HORVU3Hr1G038700.9 , HORVU4Hr1G017040.2
Wheat TraesCS4B02G105200 , TraesCS4A02G211100 , TraesCS4D02G102100 , TraesCS3A02G187800 , TraesCS3D02G191400
Populus -


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cDNA sequences
Sobic.005G104800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
2 Sobic.001G106700 expressed protein -
3 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
4 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
5 Sobic.003G117900 protein kinase, putative, expressed -
6 Sobic.004G209900 non-receptor tyrosine kinase spore lysis A, putative, expressed -
7 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
8 Sobic.002G134001 - K14490: histidine-containing phosphotransfer peotein
9 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
10 Sobic.004G203400 repressor of RNA polymerase III transcription MAF1, putative, expressed -
11 Sobic.003G370900 expressed protein -
12 Sobic.002G004800 leucine rich repeat domain containing protein, putative, expressed -
13 Sobic.004G136600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
14 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.010G277800 lysM domain containing protein, putative, expressed -
16 Sobic.001G473300 stage II sporulation protein E, putative, expressed -
17 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
18 Sobic.006G180200 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
19 Sobic.009G229200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
20 Sobic.002G031000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHLH(PubMedID : 28944535)@helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4


Gene co-expression network
sample Sobic005G104800 Sobic005G104800 Sobic003G243600 Sobic003G243600 Sobic005G104800--Sobic003G243600 Sobic001G106700 Sobic001G106700 Sobic005G104800--Sobic001G106700 Sobic006G254100 Sobic006G254100 Sobic005G104800--Sobic006G254100 Sobic004G219300 Sobic004G219300 Sobic005G104800--Sobic004G219300 Sobic003G117900 Sobic003G117900 Sobic005G104800--Sobic003G117900 Sobic004G209900 Sobic004G209900 Sobic005G104800--Sobic004G209900 Sobic003G130800 Sobic003G130800 Sobic005G104800--Sobic003G130800 Sobic002G134001 Sobic002G134001 Sobic005G104800--Sobic002G134001 Sobic009G185800 Sobic009G185800 Sobic005G104800--Sobic009G185800 Sobic001G070000 Sobic001G070000 Sobic003G243600--Sobic001G070000 Sobic007G033800 Sobic007G033800 Sobic003G243600--Sobic007G033800 Sobic004G136600 Sobic004G136600 Sobic003G243600--Sobic004G136600 Sobic001G339500 Sobic001G339500 Sobic003G243600--Sobic001G339500 Sobic003G214500 Sobic003G214500 Sobic003G243600--Sobic003G214500 Sobic010G027000 Sobic010G027000 Sobic003G243600--Sobic010G027000 Sobic003G243600--Sobic006G254100 Sobic001G302200 Sobic001G302200 Sobic003G243600--Sobic001G302200 Sobic003G350800 Sobic003G350800 Sobic003G243600--Sobic003G350800 Sobic003G370900 Sobic003G370900 Sobic001G106700--Sobic003G370900 Sobic001G106700--Sobic003G117900 Sobic001G007200 Sobic001G007200 Sobic001G106700--Sobic001G007200 Sobic001G473300 Sobic001G473300 Sobic001G106700--Sobic001G473300 Sobic001G460600 Sobic001G460600 Sobic001G106700--Sobic001G460600 Sobic001G415500 Sobic001G415500 Sobic001G106700--Sobic001G415500 Sobic001G106700--Sobic002G134001 Sobic007G216100 Sobic007G216100 Sobic001G106700--Sobic007G216100 Sobic001G106700--Sobic009G185800 Sobic006G254100--Sobic003G214500 Sobic006G254100--Sobic001G473300 Sobic004G235000 Sobic004G235000 Sobic006G254100--Sobic004G235000 Sobic003G355200 Sobic003G355200 Sobic006G254100--Sobic003G355200 Sobic006G254100--Sobic003G370900 Sobic009G229200 Sobic009G229200 Sobic006G254100--Sobic009G229200 Sobic006G254100--Sobic003G243600 Sobic009G084000 Sobic009G084000 Sobic006G254100--Sobic009G084000 Sobic003G264200 Sobic003G264200 Sobic006G254100--Sobic003G264200 Sobic001G459200 Sobic001G459200 Sobic004G219300--Sobic001G459200 Sobic004G219300--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G219300--Sobic004G330700 Sobic010G135000 Sobic010G135000 Sobic004G219300--Sobic010G135000 Sobic004G055200 Sobic004G055200 Sobic004G219300--Sobic004G055200 Sobic004G219300--Sobic009G185800 Sobic008G033600 Sobic008G033600 Sobic004G219300--Sobic008G033600 Sobic010G232100 Sobic010G232100 Sobic004G219300--Sobic010G232100 Sobic006G180200 Sobic006G180200 Sobic004G219300--Sobic006G180200 Sobic010G042100 Sobic010G042100 Sobic003G117900--Sobic010G042100 Sobic003G117900--Sobic003G370900 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic003G117900--Sobic001G007200 Sobic004G167400 Sobic004G167400 Sobic003G117900--Sobic004G167400 Sobic004G067100 Sobic004G067100 Sobic003G117900--Sobic004G067100 Sobic002G045300 Sobic002G045300 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic008G189300 Sobic008G189300 Sobic004G209900--Sobic008G189300 Sobic004G209900--Sobic010G135000 Sobic010G037300 Sobic010G037300 Sobic004G209900--Sobic010G037300 Sobic004G209900--Sobic006G180200 Sobic005G228000 Sobic005G228000 Sobic004G209900--Sobic005G228000 Sobic004G209900--Sobic003G130800 Sobic002G212200 Sobic002G212200 Sobic004G209900--Sobic002G212200 Sobic005G095900 Sobic005G095900 Sobic004G209900--Sobic005G095900 Sobic001G220400 Sobic001G220400 Sobic004G209900--Sobic001G220400 Sobic003G130800--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic003G130800--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic003G130800--Sobic010G135000 Sobic003G181500 Sobic003G181500 Sobic003G130800--Sobic003G181500 Sobic002G134001--Sobic009G229200 Sobic009G174900 Sobic009G174900 Sobic002G134001--Sobic009G174900 Sobic003G337000 Sobic003G337000 Sobic002G134001--Sobic003G337000 Sobic006G212100 Sobic006G212100 Sobic002G134001--Sobic006G212100 Sobic004G079100 Sobic004G079100 Sobic002G134001--Sobic004G079100 Sobic009G005900 Sobic009G005900 Sobic002G134001--Sobic009G005900 Sobic001G433400 Sobic001G433400 Sobic002G134001--Sobic001G433400 Sobic002G134001--Sobic001G007200 Sobic002G400000 Sobic002G400000 Sobic002G134001--Sobic002G400000 Sobic009G185800--Sobic001G459200 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic009G185800--Sobic004G330700 Sobic004G272800 Sobic004G272800 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500
Octagon: transcription factors


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