Gene annotation
Transcriptome id Sobic.006G180200.1
Synonym Sb06g025480
Functional annotation transmembrane amino acid transporter protein, putative, expressed
UniProt C5YE08
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF305
NCBI CDD KOG1304; Amino acid transporters
KEGG Orthology K14209; SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38250 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os04g47780.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a021470 , Zm00025a056799
Brachypodium KQJ84070 , KQK00685
Barley HORVU6Hr1G064740.1 , HORVU6Hr1G064740.2
Wheat -
Populus -


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cDNA sequences
Sobic.006G180200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
2 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
3 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
4 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
5 Sobic.001G131400 thioesterase family protein, putative, expressed -
6 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
8 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
9 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
10 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
11 Sobic.001G074300 40S ribosomal protein S29, putative, expressed K02980: RP-S29e, small subunit ribosomal protein S29e
12 Sobic.010G232100 Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
13 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
14 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
15 Sobic.001G459200 MYB family transcription factor, putative, expressed -
16 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
17 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
18 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
19 Sobic.001G281400 expressed protein -
20 Sobic.002G312400 domain of unknown function domain containing protein, expressed -


Gene co-expression network
sample Sobic006G180200 Sobic006G180200 Sobic003G130800 Sobic003G130800 Sobic006G180200--Sobic003G130800 Sobic010G135000 Sobic010G135000 Sobic006G180200--Sobic010G135000 Sobic009G185800 Sobic009G185800 Sobic006G180200--Sobic009G185800 Sobic004G055200 Sobic004G055200 Sobic006G180200--Sobic004G055200 Sobic001G131400 Sobic001G131400 Sobic006G180200--Sobic001G131400 Sobic008G033600 Sobic008G033600 Sobic006G180200--Sobic008G033600 Sobic004G187900 Sobic004G187900 Sobic006G180200--Sobic004G187900 Sobic003G181500 Sobic003G181500 Sobic006G180200--Sobic003G181500 Sobic008G189300 Sobic008G189300 Sobic006G180200--Sobic008G189300 Sobic003G130800--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic003G130800--Sobic003G253000 Sobic001G459200 Sobic001G459200 Sobic003G130800--Sobic001G459200 Sobic003G130800--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic003G130800--Sobic010G135000 Sobic003G130800--Sobic003G181500 Sobic010G135000--Sobic003G130800 Sobic010G135000--Sobic006G180200 Sobic010G135000--Sobic002G345300 Sobic010G135000--Sobic003G181500 Sobic010G135000--Sobic001G459200 Sobic009G023200 Sobic009G023200 Sobic010G135000--Sobic009G023200 Sobic003G350300 Sobic003G350300 Sobic010G135000--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic010G135000--Sobic004G330700 Sobic010G135000--Sobic009G185800 Sobic009G185800--Sobic001G459200 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic009G185800--Sobic003G350300 Sobic009G185800--Sobic004G330700 Sobic004G272800 Sobic004G272800 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic004G055200--Sobic003G130800 Sobic004G055200--Sobic004G330700 Sobic001G281400 Sobic001G281400 Sobic004G055200--Sobic001G281400 Sobic004G055200--Sobic004G187900 Sobic001G499300 Sobic001G499300 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic001G131400--Sobic006G180200 Sobic001G353600 Sobic001G353600 Sobic001G131400--Sobic001G353600 Sobic010G178200 Sobic010G178200 Sobic001G131400--Sobic010G178200 Sobic009G038100 Sobic009G038100 Sobic001G131400--Sobic009G038100 Sobic001G074300 Sobic001G074300 Sobic001G131400--Sobic001G074300 Sobic009G176000 Sobic009G176000 Sobic001G131400--Sobic009G176000 Sobic004G151400 Sobic004G151400 Sobic001G131400--Sobic004G151400 Sobic001G131400--Sobic008G189300 Sobic001G131400--Sobic010G135000 Sobic008G033600--Sobic004G055200 Sobic006G173900 Sobic006G173900 Sobic008G033600--Sobic006G173900 Sobic008G033600--Sobic004G187900 Sobic008G033600--Sobic001G281400 Sobic002G267500 Sobic002G267500 Sobic008G033600--Sobic002G267500 Sobic003G377900 Sobic003G377900 Sobic008G033600--Sobic003G377900 Sobic009G008900 Sobic009G008900 Sobic008G033600--Sobic009G008900 Sobic008G033600--Sobic001G459200 Sobic010G149300 Sobic010G149300 Sobic008G033600--Sobic010G149300 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic004G187900--Sobic003G350300 Sobic004G187900--Sobic009G008900 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic002G046100 Sobic002G046100 Sobic003G181500--Sobic002G046100 Sobic004G225500 Sobic004G225500 Sobic008G189300--Sobic004G225500 Sobic008G189300--Sobic004G272800 Sobic001G224400 Sobic001G224400 Sobic008G189300--Sobic001G224400 Sobic002G153500 Sobic002G153500 Sobic008G189300--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic008G189300--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G189300--Sobic001G132100 Sobic002G187500 Sobic002G187500 Sobic008G189300--Sobic002G187500 Sobic001G048832 Sobic001G048832 Sobic008G189300--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic008G189300--Sobic001G340500
Octagon: transcription factors


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