Gene annotation
Transcriptome id Sobic.002G004800.1
Synonym Sb02g000640
Functional annotation leucine rich repeat domain containing protein, putative, expressed
UniProt A0A1B6Q8K5
Pfam PF13855
Panther DB PTHR24365 PTHR24365:SF368
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G03260 : Outer arm dynein light chain 1 protein
RAP-DB (Rice) LOC_Os07g01550.1 : leucine rich repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044855
Brachypodium KQK21215
Barley HORVU2Hr1G064170.2 , HORVU2Hr1G064170.3 , HORVU2Hr1G064170.4
Wheat TraesCS2B02G282500 , TraesCS2B02G282500 , TraesCS2D02G264300 , TraesCS2D02G264300 , TraesCS2A02G259400 , TraesCS2A02G259400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G004900 transporter family protein, putative, expressed -
2 Sobic.009G177700 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
3 Sobic.003G113700 expressed protein -
4 Sobic.009G139400 expressed protein -
5 Sobic.005G092900 - -
6 Sobic.009G009600 expressed protein -
7 Sobic.008G158100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
9 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.001G297000 glycoprotein, putative, expressed -
12 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.008G172600 ATCHX, putative, expressed -
14 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
15 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
17 Sobic.001G187200 expressed protein -
18 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
19 Sobic.002G017800 expressed protein -
20 Sobic.005G011200 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic002G004800 Sobic002G004800 Sobic002G004900 Sobic002G004900 Sobic002G004800--Sobic002G004900 Sobic009G177700 Sobic009G177700 Sobic002G004800--Sobic009G177700 Sobic003G113700 Sobic003G113700 Sobic002G004800--Sobic003G113700 Sobic009G139400 Sobic009G139400 Sobic002G004800--Sobic009G139400 Sobic005G092900 Sobic005G092900 Sobic002G004800--Sobic005G092900 Sobic009G009600 Sobic009G009600 Sobic002G004800--Sobic009G009600 Sobic008G158100 Sobic008G158100 Sobic002G004800--Sobic008G158100 Sobic004G049900 Sobic004G049900 Sobic002G004800--Sobic004G049900 Sobic007G087200 Sobic007G087200 Sobic002G004800--Sobic007G087200 Sobic001G318500 Sobic001G318500 Sobic002G004900--Sobic001G318500 Sobic008G172600 Sobic008G172600 Sobic002G004900--Sobic008G172600 Sobic002G017800 Sobic002G017800 Sobic002G004900--Sobic002G017800 Sobic003G280200 Sobic003G280200 Sobic002G004900--Sobic003G280200 Sobic001G503100 Sobic001G503100 Sobic002G004900--Sobic001G503100 Sobic002G302500 Sobic002G302500 Sobic002G004900--Sobic002G302500 Sobic002G004900--Sobic009G009600 Sobic001G325400 Sobic001G325400 Sobic002G004900--Sobic001G325400 Sobic005G011200 Sobic005G011200 Sobic002G004900--Sobic005G011200 Sobic007G045700 Sobic007G045700 Sobic009G177700--Sobic007G045700 Sobic004G335600 Sobic004G335600 Sobic009G177700--Sobic004G335600 Sobic004G271400 Sobic004G271400 Sobic009G177700--Sobic004G271400 Sobic005G195301 Sobic005G195301 Sobic009G177700--Sobic005G195301 Sobic003G152600 Sobic003G152600 Sobic009G177700--Sobic003G152600 Sobic003G322400 Sobic003G322400 Sobic009G177700--Sobic003G322400 Sobic009G105600 Sobic009G105600 Sobic009G177700--Sobic009G105600 Sobic006G147000 Sobic006G147000 Sobic009G177700--Sobic006G147000 Sobic003G408100 Sobic003G408100 Sobic009G177700--Sobic003G408100 Sobic001G281400 Sobic001G281400 Sobic003G113700--Sobic001G281400 Sobic003G113700--Sobic007G087200 Sobic002G190900 Sobic002G190900 Sobic003G113700--Sobic002G190900 Sobic003G113700--Sobic009G139400 Sobic003G113700--Sobic005G195301 Sobic004G101300 Sobic004G101300 Sobic003G113700--Sobic004G101300 Sobic005G018700 Sobic005G018700 Sobic003G113700--Sobic005G018700 Sobic003G429000 Sobic003G429000 Sobic003G113700--Sobic003G429000 Sobic001G374700 Sobic001G374700 Sobic003G113700--Sobic001G374700 Sobic009G077800 Sobic009G077800 Sobic009G139400--Sobic009G077800 Sobic003G297600 Sobic003G297600 Sobic009G139400--Sobic003G297600 Sobic001G119400 Sobic001G119400 Sobic009G139400--Sobic001G119400 Sobic001G177800 Sobic001G177800 Sobic009G139400--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic002G353900 Sobic002G353900 Sobic009G139400--Sobic002G353900 Sobic003G382600 Sobic003G382600 Sobic009G139400--Sobic003G382600 Sobic005G029200 Sobic005G029200 Sobic009G139400--Sobic005G029200 Sobic004G107700 Sobic004G107700 Sobic005G092900--Sobic004G107700 Sobic005G092900--Sobic009G139400 Sobic004G176600 Sobic004G176600 Sobic005G092900--Sobic004G176600 Sobic005G092900--Sobic001G503100 Sobic006G106800 Sobic006G106800 Sobic005G092900--Sobic006G106800 Sobic005G092900--Sobic009G077800 Sobic001G400700 Sobic001G400700 Sobic005G092900--Sobic001G400700 Sobic001G481400 Sobic001G481400 Sobic005G092900--Sobic001G481400 Sobic005G092900--Sobic002G004900 Sobic009G009600--Sobic002G004900 Sobic009G009600--Sobic001G503100 Sobic003G087300 Sobic003G087300 Sobic009G009600--Sobic003G087300 Sobic010G052700 Sobic010G052700 Sobic009G009600--Sobic010G052700 Sobic009G254900 Sobic009G254900 Sobic009G009600--Sobic009G254900 Sobic001G297000 Sobic001G297000 Sobic009G009600--Sobic001G297000 Sobic004G148100 Sobic004G148100 Sobic009G009600--Sobic004G148100 Sobic009G009600--Sobic001G325400 Sobic003G364300 Sobic003G364300 Sobic009G009600--Sobic003G364300 Sobic008G027600 Sobic008G027600 Sobic008G158100--Sobic008G027600 Sobic004G148200 Sobic004G148200 Sobic008G158100--Sobic004G148200 Sobic002G139300 Sobic002G139300 Sobic008G158100--Sobic002G139300 Sobic003G417700 Sobic003G417700 Sobic008G158100--Sobic003G417700 Sobic001G187200 Sobic001G187200 Sobic008G158100--Sobic001G187200 Sobic008G158100--Sobic005G011200 Sobic006G268800 Sobic006G268800 Sobic008G158100--Sobic006G268800 Sobic002G369400 Sobic002G369400 Sobic008G158100--Sobic002G369400 Sobic009G145500 Sobic009G145500 Sobic008G158100--Sobic009G145500 Sobic003G253000 Sobic003G253000 Sobic004G049900--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic004G049900--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic004G049900--Sobic006G108400 Sobic003G130800 Sobic003G130800 Sobic004G049900--Sobic003G130800 Sobic001G459200 Sobic001G459200 Sobic004G049900--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic004G049900--Sobic004G050000 Sobic001G415500 Sobic001G415500 Sobic004G049900--Sobic001G415500 Sobic002G267500 Sobic002G267500 Sobic004G049900--Sobic002G267500 Sobic004G049900--Sobic001G281400 Sobic002G125700 Sobic002G125700 Sobic007G087200--Sobic002G125700 Sobic010G259600 Sobic010G259600 Sobic007G087200--Sobic010G259600 Sobic007G087200--Sobic009G077800 Sobic007G087200--Sobic001G325400 Sobic007G087200--Sobic009G139400 Sobic003G255200 Sobic003G255200 Sobic007G087200--Sobic003G255200 Sobic004G046200 Sobic004G046200 Sobic007G087200--Sobic004G046200 Sobic007G087200--Sobic004G101300 Sobic007G087200--Sobic004G107700
Octagon: transcription factors


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