Gene annotation
Transcriptome id Sobic.002G031000.1
Synonym PIL5, Sb02g002760, PIF1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
bHLH (PubMedID : 28944535)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1W0W242
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF95
NCBI CDD KOG4304; Transcriptional repressors of the hairy/E(spl) family (contains HLH)
KEGG Orthology K16189; phytochrome-interacting factor 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20180 : phytochrome interacting factor 3-like 5
RAP-DB (Rice) LOC_Os07g05010.3 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008411
Brachypodium KQK12892
Barley HORVU5Hr1G102240.30 , HORVU5Hr1G102240.31 , HORVU5Hr1G102240.32 , HORVU5Hr1G102240.14 , HORVU5Hr1G102240.9 , HORVU5Hr1G102240.22 , HORVU5Hr1G102240.21 , HORVU5Hr1G102240.20 , HORVU5Hr1G102240.16 , HORVU5Hr1G102240.17 , HORVU5Hr1G102240.15 , HORVU5Hr1G102240.12 , HORVU5Hr1G102240.13 , HORVU5Hr1G102240.11 , HORVU5Hr1G102240.18 , HORVU5Hr1G102240.19 , HORVU5Hr1G102240.10 , HORVU5Hr1G102240.4 , HORVU5Hr1G102240.5 , HORVU5Hr1G102240.6 , HORVU5Hr1G102240.7 , HORVU5Hr1G102240.1 , HORVU5Hr1G102240.2 , HORVU5Hr1G102240.3 , HORVU5Hr1G102240.8 , HORVU5Hr1G102240.28 , HORVU5Hr1G102240.27 , HORVU5Hr1G102240.26 , HORVU5Hr1G102240.25 , HORVU5Hr1G102240.24 , HORVU5Hr1G102240.23
Wheat TraesCS2A02G253900 , TraesCS2A02G253900 , TraesCS2A02G253900 , TraesCS5D02G428400 , TraesCS5D02G428400 , TraesCS2A02G253900 , TraesCS2D02G254400 , TraesCS2D02G254400 , TraesCS2D02G254400 , TraesCS2B02G273500 , TraesCS5A02G420200 , TraesCS5A02G420200 , TraesCS5B02G422000 , TraesCS5B02G422000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G185500 ethanol tolerance protein GEKO1, putative, expressed K09716: dtdA, D-aminoacyl-tRNA deacylase
2 Sobic.003G380000 expressed protein -
3 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
4 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
5 Sobic.003G377900 chitin-inducible gibberellin-responsive protein, putative, expressed -
6 Sobic.010G232100 Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
7 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
8 Sobic.002G291200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
9 Sobic.010G031300 auxin-induced protein 5NG4, putative, expressed -
10 Sobic.008G025500 DUF567 domain containing protein, putative, expressed -
11 Sobic.001G477650 - -
12 Sobic.002G090600 OsFBX397 - F-box domain containing protein, expressed -
13 Sobic.004G209900 non-receptor tyrosine kinase spore lysis A, putative, expressed -
14 Sobic.010G277800 lysM domain containing protein, putative, expressed -
15 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
16 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
17 Sobic.002G413000 AAA-type ATPase family protein, putative, expressed -
18 Sobic.001G032800 armadillo/beta-catenin-like repeat containing protein, expressed K09562: HSPBP1, hsp70-interacting protein
19 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.004G207200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic002G031000 Sobic002G031000 Sobic010G185500 Sobic010G185500 Sobic002G031000--Sobic010G185500 Sobic003G380000 Sobic003G380000 Sobic002G031000--Sobic003G380000 Sobic004G219300 Sobic004G219300 Sobic002G031000--Sobic004G219300 Sobic008G033600 Sobic008G033600 Sobic002G031000--Sobic008G033600 Sobic003G377900 Sobic003G377900 Sobic002G031000--Sobic003G377900 Sobic010G232100 Sobic010G232100 Sobic002G031000--Sobic010G232100 Sobic003G130800 Sobic003G130800 Sobic002G031000--Sobic003G130800 Sobic002G291200 Sobic002G291200 Sobic002G031000--Sobic002G291200 Sobic010G031300 Sobic010G031300 Sobic002G031000--Sobic010G031300 Sobic010G185500--Sobic008G033600 Sobic010G071900 Sobic010G071900 Sobic010G185500--Sobic010G071900 Sobic002G264400 Sobic002G264400 Sobic010G185500--Sobic002G264400 Sobic003G206900 Sobic003G206900 Sobic010G185500--Sobic003G206900 Sobic008G189300 Sobic008G189300 Sobic010G185500--Sobic008G189300 Sobic006G264300 Sobic006G264300 Sobic010G185500--Sobic006G264300 Sobic010G019900 Sobic010G019900 Sobic010G185500--Sobic010G019900 Sobic010G243200 Sobic010G243200 Sobic010G185500--Sobic010G243200 Sobic003G228000 Sobic003G228000 Sobic010G185500--Sobic003G228000 Sobic003G380000--Sobic010G232100 Sobic005G228000 Sobic005G228000 Sobic003G380000--Sobic005G228000 Sobic002G345300 Sobic002G345300 Sobic003G380000--Sobic002G345300 Sobic010G178200 Sobic010G178200 Sobic003G380000--Sobic010G178200 Sobic003G285800 Sobic003G285800 Sobic003G380000--Sobic003G285800 Sobic010G135000 Sobic010G135000 Sobic003G380000--Sobic010G135000 Sobic009G046600 Sobic009G046600 Sobic003G380000--Sobic009G046600 Sobic004G157000 Sobic004G157000 Sobic003G380000--Sobic004G157000 Sobic002G046100 Sobic002G046100 Sobic003G380000--Sobic002G046100 Sobic001G459200 Sobic001G459200 Sobic004G219300--Sobic001G459200 Sobic004G219300--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G219300--Sobic004G330700 Sobic004G219300--Sobic010G135000 Sobic004G055200 Sobic004G055200 Sobic004G219300--Sobic004G055200 Sobic009G185800 Sobic009G185800 Sobic004G219300--Sobic009G185800 Sobic004G219300--Sobic008G033600 Sobic004G219300--Sobic010G232100 Sobic006G180200 Sobic006G180200 Sobic004G219300--Sobic006G180200 Sobic008G033600--Sobic004G055200 Sobic006G173900 Sobic006G173900 Sobic008G033600--Sobic006G173900 Sobic004G187900 Sobic004G187900 Sobic008G033600--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic008G033600--Sobic001G281400 Sobic002G267500 Sobic002G267500 Sobic008G033600--Sobic002G267500 Sobic008G033600--Sobic003G377900 Sobic009G008900 Sobic009G008900 Sobic008G033600--Sobic009G008900 Sobic008G033600--Sobic001G459200 Sobic010G149300 Sobic010G149300 Sobic008G033600--Sobic010G149300 Sobic003G377900--Sobic010G031300 Sobic006G267200 Sobic006G267200 Sobic003G377900--Sobic006G267200 Sobic003G377900--Sobic008G033600 Sobic003G377900--Sobic010G149300 Sobic001G397200 Sobic001G397200 Sobic003G377900--Sobic001G397200 Sobic006G127900 Sobic006G127900 Sobic003G377900--Sobic006G127900 Sobic001G405500 Sobic001G405500 Sobic003G377900--Sobic001G405500 Sobic003G086600 Sobic003G086600 Sobic003G377900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic003G377900--Sobic004G280200 Sobic010G232100--Sobic004G055200 Sobic008G025500 Sobic008G025500 Sobic010G232100--Sobic008G025500 Sobic010G232100--Sobic003G130800 Sobic010G232100--Sobic010G178200 Sobic010G232100--Sobic006G180200 Sobic010G232100--Sobic009G046600 Sobic010G232100--Sobic003G380000 Sobic010G232100--Sobic004G219300 Sobic006G099700 Sobic006G099700 Sobic010G232100--Sobic006G099700 Sobic003G130800--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic003G130800--Sobic006G180200 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic003G130800--Sobic010G135000 Sobic003G181500 Sobic003G181500 Sobic003G130800--Sobic003G181500 Sobic009G203100 Sobic009G203100 Sobic002G291200--Sobic009G203100 Sobic002G291200--Sobic004G219300 Sobic002G194100 Sobic002G194100 Sobic002G291200--Sobic002G194100 Sobic002G291200--Sobic009G185800 Sobic010G277800 Sobic010G277800 Sobic002G291200--Sobic010G277800 Sobic002G291200--Sobic001G459200 Sobic005G034400 Sobic005G034400 Sobic002G291200--Sobic005G034400 Sobic001G040800 Sobic001G040800 Sobic002G291200--Sobic001G040800 Sobic010G042100 Sobic010G042100 Sobic002G291200--Sobic010G042100 Sobic001G309600 Sobic001G309600 Sobic010G031300--Sobic001G309600 Sobic001G254100 Sobic001G254100 Sobic010G031300--Sobic001G254100 Sobic002G215300 Sobic002G215300 Sobic010G031300--Sobic002G215300 Sobic010G031300--Sobic003G086600 Sobic001G107800 Sobic001G107800 Sobic010G031300--Sobic001G107800 Sobic010G031300--Sobic001G397200 Sobic003G394400 Sobic003G394400 Sobic010G031300--Sobic003G394400 Sobic010G032100 Sobic010G032100 Sobic010G031300--Sobic010G032100 Sobic002G261200 Sobic002G261200 Sobic010G031300--Sobic002G261200
Octagon: transcription factors


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