Gene annotation
Transcriptome id Sobic.004G207200.1
Synonym Sb04g025260
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5XX69
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05805 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g39140.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021262 , Zm00025a005089 , Zm00025a026403
Brachypodium -
Barley HORVU6Hr1G054910.3 , HORVU6Hr1G054910.1 , HORVU6Hr1G054910.7 , HORVU6Hr1G054910.6 , HORVU6Hr1G054910.5 , HORVU6Hr1G054910.4 , HORVU6Hr1G054910.9 , HORVU6Hr1G054910.13 , HORVU6Hr1G054910.12 , HORVU6Hr1G054910.11 , HORVU6Hr1G054910.15 , HORVU6Hr1G054910.14
Wheat TraesCS3B02G426900 , TraesCS6B02G244800 , TraesCS3A02G395000 , TraesCS6D02G197500 , TraesCS3D02G388700 , TraesCS6A02G214900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
2 Sobic.001G403300 cyclase/dehydrase family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
3 Sobic.003G211200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed -
4 Sobic.003G371750 - -
5 Sobic.002G335300 uncharacterized Cys-rich domain containing protein, putative, expressed -
6 Sobic.006G127900 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.005G093000 - -
8 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.006G249300 expressed protein -
10 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
11 Sobic.010G274900 serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed -
12 Sobic.006G206000 WRKY68, expressed -
13 Sobic.010G062100 expressed protein -
14 Sobic.001G009500 - -
15 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
16 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
17 Sobic.004G066600 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
18 Sobic.009G230100 expressed protein -
19 Sobic.010G195500 reductase, putative, expressed -
20 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G207200 Sobic004G207200 Sobic002G345300 Sobic002G345300 Sobic004G207200--Sobic002G345300 Sobic001G403300 Sobic001G403300 Sobic004G207200--Sobic001G403300 Sobic003G211200 Sobic003G211200 Sobic004G207200--Sobic003G211200 Sobic003G371750 Sobic003G371750 Sobic004G207200--Sobic003G371750 Sobic002G335300 Sobic002G335300 Sobic004G207200--Sobic002G335300 Sobic006G127900 Sobic006G127900 Sobic004G207200--Sobic006G127900 Sobic005G093000 Sobic005G093000 Sobic004G207200--Sobic005G093000 Sobic007G087200 Sobic007G087200 Sobic004G207200--Sobic007G087200 Sobic006G249300 Sobic006G249300 Sobic004G207200--Sobic006G249300 Sobic002G046100 Sobic002G046100 Sobic002G345300--Sobic002G046100 Sobic003G350300 Sobic003G350300 Sobic002G345300--Sobic003G350300 Sobic001G281400 Sobic001G281400 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G267500 Sobic002G267500 Sobic002G345300--Sobic002G267500 Sobic003G253000 Sobic003G253000 Sobic002G345300--Sobic003G253000 Sobic003G285800 Sobic003G285800 Sobic002G345300--Sobic003G285800 Sobic004G272800 Sobic004G272800 Sobic002G345300--Sobic004G272800 Sobic010G149300 Sobic010G149300 Sobic002G345300--Sobic010G149300 Sobic001G432700 Sobic001G432700 Sobic001G403300--Sobic001G432700 Sobic004G195000 Sobic004G195000 Sobic001G403300--Sobic004G195000 Sobic010G195500 Sobic010G195500 Sobic001G403300--Sobic010G195500 Sobic006G068800 Sobic006G068800 Sobic001G403300--Sobic006G068800 Sobic001G403300--Sobic004G207200 Sobic005G080200 Sobic005G080200 Sobic001G403300--Sobic005G080200 Sobic003G135700 Sobic003G135700 Sobic001G403300--Sobic003G135700 Sobic009G065300 Sobic009G065300 Sobic001G403300--Sobic009G065300 Sobic003G384700 Sobic003G384700 Sobic001G403300--Sobic003G384700 Sobic001G009500 Sobic001G009500 Sobic003G211200--Sobic001G009500 Sobic009G077800 Sobic009G077800 Sobic003G211200--Sobic009G077800 Sobic003G344600 Sobic003G344600 Sobic003G211200--Sobic003G344600 Sobic009G229000 Sobic009G229000 Sobic003G211200--Sobic009G229000 Sobic001G247600 Sobic001G247600 Sobic003G211200--Sobic001G247600 Sobic002G255200 Sobic002G255200 Sobic003G211200--Sobic002G255200 Sobic003G393700 Sobic003G393700 Sobic003G211200--Sobic003G393700 Sobic003G211200--Sobic002G335300 Sobic003G211200--Sobic007G087200 Sobic004G262200 Sobic004G262200 Sobic003G371750--Sobic004G262200 Sobic002G326500 Sobic002G326500 Sobic003G371750--Sobic002G326500 Sobic002G003800 Sobic002G003800 Sobic003G371750--Sobic002G003800 Sobic010G062100 Sobic010G062100 Sobic003G371750--Sobic010G062100 Sobic001G304201 Sobic001G304201 Sobic003G371750--Sobic001G304201 Sobic009G221500 Sobic009G221500 Sobic003G371750--Sobic009G221500 Sobic004G042000 Sobic004G042000 Sobic003G371750--Sobic004G042000 Sobic003G305700 Sobic003G305700 Sobic003G371750--Sobic003G305700 Sobic006G197100 Sobic006G197100 Sobic003G371750--Sobic006G197100 Sobic004G212900 Sobic004G212900 Sobic002G335300--Sobic004G212900 Sobic002G335300--Sobic003G344600 Sobic003G357300 Sobic003G357300 Sobic002G335300--Sobic003G357300 Sobic002G335300--Sobic001G009500 Sobic009G074100 Sobic009G074100 Sobic002G335300--Sobic009G074100 Sobic008G103700 Sobic008G103700 Sobic002G335300--Sobic008G103700 Sobic006G046900 Sobic006G046900 Sobic002G335300--Sobic006G046900 Sobic009G243400 Sobic009G243400 Sobic002G335300--Sobic009G243400 Sobic002G335300--Sobic003G211200 Sobic010G099900 Sobic010G099900 Sobic006G127900--Sobic010G099900 Sobic009G008900 Sobic009G008900 Sobic006G127900--Sobic009G008900 Sobic009G032800 Sobic009G032800 Sobic006G127900--Sobic009G032800 Sobic003G078100 Sobic003G078100 Sobic006G127900--Sobic003G078100 Sobic003G086600 Sobic003G086600 Sobic006G127900--Sobic003G086600 Sobic006G275200 Sobic006G275200 Sobic006G127900--Sobic006G275200 Sobic006G092500 Sobic006G092500 Sobic006G127900--Sobic006G092500 Sobic001G476500 Sobic001G476500 Sobic006G127900--Sobic001G476500 Sobic006G173900 Sobic006G173900 Sobic006G127900--Sobic006G173900 Sobic002G329000 Sobic002G329000 Sobic005G093000--Sobic002G329000 Sobic001G389000 Sobic001G389000 Sobic005G093000--Sobic001G389000 Sobic010G136000 Sobic010G136000 Sobic005G093000--Sobic010G136000 Sobic005G093000--Sobic010G195500 Sobic010G268400 Sobic010G268400 Sobic005G093000--Sobic010G268400 Sobic003G429000 Sobic003G429000 Sobic005G093000--Sobic003G429000 Sobic005G018700 Sobic005G018700 Sobic005G093000--Sobic005G018700 Sobic001G500000 Sobic001G500000 Sobic005G093000--Sobic001G500000 Sobic005G093000--Sobic009G074100 Sobic002G125700 Sobic002G125700 Sobic007G087200--Sobic002G125700 Sobic010G259600 Sobic010G259600 Sobic007G087200--Sobic010G259600 Sobic007G087200--Sobic009G077800 Sobic001G325400 Sobic001G325400 Sobic007G087200--Sobic001G325400 Sobic009G139400 Sobic009G139400 Sobic007G087200--Sobic009G139400 Sobic003G255200 Sobic003G255200 Sobic007G087200--Sobic003G255200 Sobic004G046200 Sobic004G046200 Sobic007G087200--Sobic004G046200 Sobic004G101300 Sobic004G101300 Sobic007G087200--Sobic004G101300 Sobic004G107700 Sobic004G107700 Sobic007G087200--Sobic004G107700 Sobic001G139100 Sobic001G139100 Sobic006G249300--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic006G249300--Sobic001G169500 Sobic004G100700 Sobic004G100700 Sobic006G249300--Sobic004G100700 Sobic008G186100 Sobic008G186100 Sobic006G249300--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic006G249300--Sobic005G011300 Sobic006G249300--Sobic003G086600 Sobic006G249300--Sobic010G259600 Sobic003G084400 Sobic003G084400 Sobic006G249300--Sobic003G084400 Sobic009G183400 Sobic009G183400 Sobic006G249300--Sobic009G183400
Octagon: transcription factors


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