Gene annotation
Transcriptome id Sobic.003G377900.1,Sobic.003G377900.2
Synonym SCL1, Sb03g041760
Functional annotation chitin-inducible gibberellin-responsive protein, putative, expressed
UniProt A0A1B6Q7E5
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21450 : SCARECROW-like 1
RAP-DB (Rice) LOC_Os01g65900.1 : chitin-inducible gibberellin-responsive protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK10894
Barley HORVU3Hr1G091250.4 , HORVU3Hr1G091250.5 , HORVU3Hr1G091250.2 , HORVU3Hr1G091250.3 , HORVU3Hr1G091250.1
Wheat TraesCS3B02G441600 , TraesCS3D02G403100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G031300 auxin-induced protein 5NG4, putative, expressed -
2 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
3 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
5 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
6 Sobic.006G127900 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
8 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
10 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
12 Sobic.001G387900 Chaperone - similar to Cluster: DnaJ domain containing protein(PubMedID : 24655390)@ Oryza sativa(PubMedID : 27586543)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 24655390)@chaperone protein dnaJ, putative, expressed -
13 Sobic.003G387000 expressed protein -
14 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
15 Sobic.003G288600 reticulon domain containing protein, putative, expressed -
16 Sobic.006G275200 CHCH domain containing protein, expressed -
17 Sobic.002G261200 expressed protein -
18 Sobic.001G308300 expressed protein -
19 Sobic.004G177700 AIG1, putative, expressed -
20 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G377900 Sobic003G377900 Sobic010G031300 Sobic010G031300 Sobic003G377900--Sobic010G031300 Sobic006G267200 Sobic006G267200 Sobic003G377900--Sobic006G267200 Sobic008G033600 Sobic008G033600 Sobic003G377900--Sobic008G033600 Sobic010G149300 Sobic010G149300 Sobic003G377900--Sobic010G149300 Sobic001G397200 Sobic001G397200 Sobic003G377900--Sobic001G397200 Sobic006G127900 Sobic006G127900 Sobic003G377900--Sobic006G127900 Sobic001G405500 Sobic001G405500 Sobic003G377900--Sobic001G405500 Sobic003G086600 Sobic003G086600 Sobic003G377900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic003G377900--Sobic004G280200 Sobic001G309600 Sobic001G309600 Sobic010G031300--Sobic001G309600 Sobic001G254100 Sobic001G254100 Sobic010G031300--Sobic001G254100 Sobic002G215300 Sobic002G215300 Sobic010G031300--Sobic002G215300 Sobic010G031300--Sobic003G086600 Sobic001G107800 Sobic001G107800 Sobic010G031300--Sobic001G107800 Sobic010G031300--Sobic001G397200 Sobic003G394400 Sobic003G394400 Sobic010G031300--Sobic003G394400 Sobic010G032100 Sobic010G032100 Sobic010G031300--Sobic010G032100 Sobic002G261200 Sobic002G261200 Sobic010G031300--Sobic002G261200 Sobic001G459800 Sobic001G459800 Sobic006G267200--Sobic001G459800 Sobic004G065500 Sobic004G065500 Sobic006G267200--Sobic004G065500 Sobic003G393900 Sobic003G393900 Sobic006G267200--Sobic003G393900 Sobic006G267200--Sobic001G405500 Sobic009G141800 Sobic009G141800 Sobic006G267200--Sobic009G141800 Sobic010G086200 Sobic010G086200 Sobic006G267200--Sobic010G086200 Sobic004G146000 Sobic004G146000 Sobic006G267200--Sobic004G146000 Sobic004G141200 Sobic004G141200 Sobic006G267200--Sobic004G141200 Sobic001G320900 Sobic001G320900 Sobic006G267200--Sobic001G320900 Sobic004G055200 Sobic004G055200 Sobic008G033600--Sobic004G055200 Sobic006G173900 Sobic006G173900 Sobic008G033600--Sobic006G173900 Sobic004G187900 Sobic004G187900 Sobic008G033600--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic008G033600--Sobic001G281400 Sobic002G267500 Sobic002G267500 Sobic008G033600--Sobic002G267500 Sobic008G033600--Sobic003G377900 Sobic009G008900 Sobic009G008900 Sobic008G033600--Sobic009G008900 Sobic001G459200 Sobic001G459200 Sobic008G033600--Sobic001G459200 Sobic008G033600--Sobic010G149300 Sobic010G149300--Sobic001G281400 Sobic010G149300--Sobic010G086200 Sobic010G149300--Sobic002G267500 Sobic009G143400 Sobic009G143400 Sobic010G149300--Sobic009G143400 Sobic003G181500 Sobic003G181500 Sobic010G149300--Sobic003G181500 Sobic002G046100 Sobic002G046100 Sobic010G149300--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic010G149300--Sobic004G177700 Sobic002G345300 Sobic002G345300 Sobic010G149300--Sobic002G345300 Sobic009G129000 Sobic009G129000 Sobic010G149300--Sobic009G129000 Sobic001G397200--Sobic010G032100 Sobic001G397200--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic001G397200--Sobic006G032700 Sobic001G481500 Sobic001G481500 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic008G070350 Sobic008G070350 Sobic001G397200--Sobic008G070350 Sobic002G068600 Sobic002G068600 Sobic001G397200--Sobic002G068600 Sobic003G367200 Sobic003G367200 Sobic001G397200--Sobic003G367200 Sobic007G026600 Sobic007G026600 Sobic001G397200--Sobic007G026600 Sobic010G099900 Sobic010G099900 Sobic006G127900--Sobic010G099900 Sobic006G127900--Sobic009G008900 Sobic009G032800 Sobic009G032800 Sobic006G127900--Sobic009G032800 Sobic003G078100 Sobic003G078100 Sobic006G127900--Sobic003G078100 Sobic006G127900--Sobic003G086600 Sobic006G275200 Sobic006G275200 Sobic006G127900--Sobic006G275200 Sobic006G092500 Sobic006G092500 Sobic006G127900--Sobic006G092500 Sobic001G476500 Sobic001G476500 Sobic006G127900--Sobic001G476500 Sobic006G127900--Sobic006G173900 Sobic001G405500--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic003G144700 Sobic003G144700 Sobic001G405500--Sobic003G144700 Sobic003G355100 Sobic003G355100 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic001G405500--Sobic006G267200 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic004G280200--Sobic003G367200 Sobic004G280200--Sobic003G144700 Sobic004G280200--Sobic006G275200 Sobic004G280200--Sobic002G261200
Octagon: transcription factors


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