Gene annotation
Transcriptome id Sobic.005G042800.1
Synonym Sb05g003540,
Functional annotation - (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF623 domain containing protein, expressed
UniProt C5Y527
Pfam PF04844
Panther DB PTHR33057 PTHR33057:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52525 : ovate family protein 6
RAP-DB (Rice) LOC_Os12g06160.1 : DUF623 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033535 , Zm00025a012963
Brachypodium KQJ98207 , KQJ92176
Barley HORVU5Hr1G040310.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G125100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
2 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
3 Sobic.001G292700 crcB-like protein, expressed -
4 Sobic.008G077500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
5 Sobic.009G016000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
6 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
7 Sobic.006G064200 expressed protein -
8 Sobic.004G151500 AP2 domain containing protein, expressed -
9 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
10 Sobic.003G371250 - -
11 Sobic.003G026600 osFTL8 FT-Like8 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
12 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
13 Sobic.007G090900 heat shock protein-related, putative, expressed -
14 Sobic.008G052900 CBS domain-containing protein, putative, expressed -
15 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
16 Sobic.005G206400 - -
17 Sobic.002G125200 aquaporin protein, putative, expressed K09872: aquaporin PIP
18 Sobic.007G006400 - -
19 Sobic.002G226400 EF hand family protein, putative, expressed -
20 Sobic.003G097600 - -


Gene co-expression network
sample Sobic005G042800 Sobic005G042800 Sobic004G125100 Sobic004G125100 Sobic005G042800--Sobic004G125100 Sobic003G243600 Sobic003G243600 Sobic005G042800--Sobic003G243600 Sobic001G292700 Sobic001G292700 Sobic005G042800--Sobic001G292700 Sobic008G077500 Sobic008G077500 Sobic005G042800--Sobic008G077500 Sobic009G016000 Sobic009G016000 Sobic005G042800--Sobic009G016000 Sobic003G139500 Sobic003G139500 Sobic005G042800--Sobic003G139500 Sobic006G064200 Sobic006G064200 Sobic005G042800--Sobic006G064200 Sobic004G151500 Sobic004G151500 Sobic005G042800--Sobic004G151500 Sobic003G372400 Sobic003G372400 Sobic005G042800--Sobic003G372400 Sobic006G093100 Sobic006G093100 Sobic004G125100--Sobic006G093100 Sobic004G125100--Sobic003G372400 Sobic004G125100--Sobic005G042800 Sobic002G056500 Sobic002G056500 Sobic004G125100--Sobic002G056500 Sobic003G097600 Sobic003G097600 Sobic004G125100--Sobic003G097600 Sobic010G100300 Sobic010G100300 Sobic004G125100--Sobic010G100300 Sobic003G154300 Sobic003G154300 Sobic004G125100--Sobic003G154300 Sobic003G042900 Sobic003G042900 Sobic004G125100--Sobic003G042900 Sobic008G129900 Sobic008G129900 Sobic004G125100--Sobic008G129900 Sobic001G070000 Sobic001G070000 Sobic003G243600--Sobic001G070000 Sobic007G033800 Sobic007G033800 Sobic003G243600--Sobic007G033800 Sobic004G136600 Sobic004G136600 Sobic003G243600--Sobic004G136600 Sobic001G339500 Sobic001G339500 Sobic003G243600--Sobic001G339500 Sobic003G214500 Sobic003G214500 Sobic003G243600--Sobic003G214500 Sobic010G027000 Sobic010G027000 Sobic003G243600--Sobic010G027000 Sobic006G254100 Sobic006G254100 Sobic003G243600--Sobic006G254100 Sobic001G302200 Sobic001G302200 Sobic003G243600--Sobic001G302200 Sobic003G350800 Sobic003G350800 Sobic003G243600--Sobic003G350800 Sobic003G127800 Sobic003G127800 Sobic001G292700--Sobic003G127800 Sobic001G043000 Sobic001G043000 Sobic001G292700--Sobic001G043000 Sobic001G491000 Sobic001G491000 Sobic001G292700--Sobic001G491000 Sobic001G263100 Sobic001G263100 Sobic001G292700--Sobic001G263100 Sobic001G292700--Sobic003G097600 Sobic004G151800 Sobic004G151800 Sobic001G292700--Sobic004G151800 Sobic004G154200 Sobic004G154200 Sobic001G292700--Sobic004G154200 Sobic006G153400 Sobic006G153400 Sobic001G292700--Sobic006G153400 Sobic003G319800 Sobic003G319800 Sobic001G292700--Sobic003G319800 Sobic007G090900 Sobic007G090900 Sobic008G077500--Sobic007G090900 Sobic004G268300 Sobic004G268300 Sobic008G077500--Sobic004G268300 Sobic001G243200 Sobic001G243200 Sobic008G077500--Sobic001G243200 Sobic008G052900 Sobic008G052900 Sobic008G077500--Sobic008G052900 Sobic009G103000 Sobic009G103000 Sobic008G077500--Sobic009G103000 Sobic006G212800 Sobic006G212800 Sobic008G077500--Sobic006G212800 Sobic003G157900 Sobic003G157900 Sobic008G077500--Sobic003G157900 Sobic003G260100 Sobic003G260100 Sobic008G077500--Sobic003G260100 Sobic002G162400 Sobic002G162400 Sobic008G077500--Sobic002G162400 Sobic009G016000--Sobic003G139500 Sobic009G246300 Sobic009G246300 Sobic009G016000--Sobic009G246300 Sobic010G183600 Sobic010G183600 Sobic009G016000--Sobic010G183600 Sobic008G180800 Sobic008G180800 Sobic009G016000--Sobic008G180800 Sobic009G016000--Sobic001G043000 Sobic007G121300 Sobic007G121300 Sobic009G016000--Sobic007G121300 Sobic003G428600 Sobic003G428600 Sobic009G016000--Sobic003G428600 Sobic001G331600 Sobic001G331600 Sobic009G016000--Sobic001G331600 Sobic010G104700 Sobic010G104700 Sobic009G016000--Sobic010G104700 Sobic003G139500--Sobic001G263100 Sobic004G322700 Sobic004G322700 Sobic003G139500--Sobic004G322700 Sobic006G161500 Sobic006G161500 Sobic003G139500--Sobic006G161500 Sobic004G322600 Sobic004G322600 Sobic003G139500--Sobic004G322600 Sobic010G104800 Sobic010G104800 Sobic003G139500--Sobic010G104800 Sobic003G139500--Sobic002G162400 Sobic008G038500 Sobic008G038500 Sobic003G139500--Sobic008G038500 Sobic003G139500--Sobic001G331600 Sobic003G139500--Sobic001G043000 Sobic006G130000 Sobic006G130000 Sobic006G064200--Sobic006G130000 Sobic002G200700 Sobic002G200700 Sobic006G064200--Sobic002G200700 Sobic006G064200--Sobic004G151500 Sobic003G224100 Sobic003G224100 Sobic006G064200--Sobic003G224100 Sobic006G011300 Sobic006G011300 Sobic006G064200--Sobic006G011300 Sobic002G201900 Sobic002G201900 Sobic006G064200--Sobic002G201900 Sobic003G334000 Sobic003G334000 Sobic006G064200--Sobic003G334000 Sobic005G089600 Sobic005G089600 Sobic006G064200--Sobic005G089600 Sobic004G154400 Sobic004G154400 Sobic006G064200--Sobic004G154400 Sobic004G298900 Sobic004G298900 Sobic004G151500--Sobic004G298900 Sobic004G151500--Sobic004G268300 Sobic003G014300 Sobic003G014300 Sobic004G151500--Sobic003G014300 Sobic003G037300 Sobic003G037300 Sobic004G151500--Sobic003G037300 Sobic004G151500--Sobic008G052900 Sobic009G062400 Sobic009G062400 Sobic004G151500--Sobic009G062400 Sobic006G258700 Sobic006G258700 Sobic004G151500--Sobic006G258700 Sobic006G260800 Sobic006G260800 Sobic004G151500--Sobic006G260800 Sobic001G183000 Sobic001G183000 Sobic004G151500--Sobic001G183000 Sobic004G215800 Sobic004G215800 Sobic003G372400--Sobic004G215800 Sobic003G372400--Sobic002G056500 Sobic005G231500 Sobic005G231500 Sobic003G372400--Sobic005G231500 Sobic003G372400--Sobic003G097600 Sobic007G105500 Sobic007G105500 Sobic003G372400--Sobic007G105500 Sobic003G314000 Sobic003G314000 Sobic003G372400--Sobic003G314000 Sobic003G372400--Sobic006G093100 Sobic003G372400--Sobic008G129900 Sobic003G371250 Sobic003G371250 Sobic003G372400--Sobic003G371250
Octagon: transcription factors


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