Gene annotation
Transcriptome id Sobic.004G151500.2,Sobic.004G151500.1,Sobic.004G151500.3
Synonym Sb04g020150
Functional annotation AP2 domain containing protein, expressed
UniProt A0A1Z5RMQ8 , A0A194YPY1 , A0A194YQZ9
Pfam PF00847
Panther DB PTHR32467 PTHR32467:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0007275multicellular organism development


Orthologs (automatic annotation)
TAIR AT4G13040 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g29550.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020372
Brachypodium KQJ99548
Barley HORVU6Hr1G042680.8 , HORVU6Hr1G042680.3 , HORVU6Hr1G042680.4 , HORVU6Hr1G042680.6 , HORVU6Hr1G042680.7 , HORVU6Hr1G042680.1 , HORVU6Hr1G042680.2
Wheat TraesCS6A02G196500 , TraesCS6A02G196500 , TraesCS6D02G179200 , TraesCS6B02G229700
Populus -


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cDNA sequences
Sobic.004G151500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G298900 OR, putative, expressed -
2 Sobic.004G268300 phosphatase, putative, expressed -
3 Sobic.003G014300 expressed protein -
4 Sobic.003G037300 Twin LOV 1, putative, expressed -
5 Sobic.008G052900 CBS domain-containing protein, putative, expressed -
6 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
7 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
8 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
9 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
10 Sobic.006G215600 SHR5-receptor-like kinase, putative, expressed -
11 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
12 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
13 Sobic.003G306600 acetamidase, putative, expressed K01455: formamidase
14 Sobic.007G150100 HD domain containing protein, putative, expressed -
15 Sobic.001G512500 expressed protein -
16 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
17 Sobic.006G064200 expressed protein -
18 Sobic.009G207900 expressed protein -
19 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
20 Sobic.008G006100 MATE efflux protein, putative, expressed -


Gene co-expression network
sample Sobic004G151500 Sobic004G151500 Sobic004G298900 Sobic004G298900 Sobic004G151500--Sobic004G298900 Sobic004G268300 Sobic004G268300 Sobic004G151500--Sobic004G268300 Sobic003G014300 Sobic003G014300 Sobic004G151500--Sobic003G014300 Sobic003G037300 Sobic003G037300 Sobic004G151500--Sobic003G037300 Sobic008G052900 Sobic008G052900 Sobic004G151500--Sobic008G052900 Sobic009G062400 Sobic009G062400 Sobic004G151500--Sobic009G062400 Sobic006G258700 Sobic006G258700 Sobic004G151500--Sobic006G258700 Sobic006G260800 Sobic006G260800 Sobic004G151500--Sobic006G260800 Sobic001G183000 Sobic001G183000 Sobic004G151500--Sobic001G183000 Sobic004G298900--Sobic003G037300 Sobic004G298900--Sobic009G062400 Sobic004G298900--Sobic006G258700 Sobic008G006100 Sobic008G006100 Sobic004G298900--Sobic008G006100 Sobic004G298900--Sobic003G014300 Sobic002G102200 Sobic002G102200 Sobic004G298900--Sobic002G102200 Sobic005G111550 Sobic005G111550 Sobic004G298900--Sobic005G111550 Sobic004G298900--Sobic004G151500 Sobic004G298900--Sobic006G260800 Sobic004G268300--Sobic008G052900 Sobic002G206300 Sobic002G206300 Sobic004G268300--Sobic002G206300 Sobic009G219100 Sobic009G219100 Sobic004G268300--Sobic009G219100 Sobic004G268300--Sobic004G151500 Sobic002G402700 Sobic002G402700 Sobic004G268300--Sobic002G402700 Sobic008G074000 Sobic008G074000 Sobic004G268300--Sobic008G074000 Sobic003G306600 Sobic003G306600 Sobic004G268300--Sobic003G306600 Sobic001G504400 Sobic001G504400 Sobic004G268300--Sobic001G504400 Sobic001G540600 Sobic001G540600 Sobic004G268300--Sobic001G540600 Sobic003G014300--Sobic006G258700 Sobic003G014300--Sobic004G298900 Sobic010G269400 Sobic010G269400 Sobic003G014300--Sobic010G269400 Sobic004G300000 Sobic004G300000 Sobic003G014300--Sobic004G300000 Sobic003G014300--Sobic003G037300 Sobic001G512500 Sobic001G512500 Sobic003G014300--Sobic001G512500 Sobic005G175500 Sobic005G175500 Sobic003G014300--Sobic005G175500 Sobic010G035500 Sobic010G035500 Sobic003G014300--Sobic010G035500 Sobic003G014300--Sobic004G151500 Sobic003G037300--Sobic004G298900 Sobic003G037300--Sobic009G062400 Sobic003G037300--Sobic008G006100 Sobic003G037300--Sobic010G269400 Sobic009G207900 Sobic009G207900 Sobic003G037300--Sobic009G207900 Sobic004G154400 Sobic004G154400 Sobic003G037300--Sobic004G154400 Sobic010G076800 Sobic010G076800 Sobic003G037300--Sobic010G076800 Sobic001G521200 Sobic001G521200 Sobic003G037300--Sobic001G521200 Sobic001G286600 Sobic001G286600 Sobic003G037300--Sobic001G286600 Sobic008G052900--Sobic009G219100 Sobic008G052900--Sobic004G268300 Sobic008G052900--Sobic002G206300 Sobic008G052900--Sobic009G207900 Sobic009G038701 Sobic009G038701 Sobic008G052900--Sobic009G038701 Sobic001G180200 Sobic001G180200 Sobic008G052900--Sobic001G180200 Sobic010G067100 Sobic010G067100 Sobic008G052900--Sobic010G067100 Sobic008G052900--Sobic001G504400 Sobic006G212800 Sobic006G212800 Sobic008G052900--Sobic006G212800 Sobic009G062400--Sobic008G006100 Sobic002G112400 Sobic002G112400 Sobic009G062400--Sobic002G112400 Sobic009G062400--Sobic009G207900 Sobic009G062400--Sobic009G219100 Sobic009G062400--Sobic003G037300 Sobic009G062400--Sobic004G154400 Sobic009G062400--Sobic001G286600 Sobic003G345500 Sobic003G345500 Sobic009G062400--Sobic003G345500 Sobic003G284800 Sobic003G284800 Sobic009G062400--Sobic003G284800 Sobic006G258700--Sobic003G014300 Sobic006G258700--Sobic010G269400 Sobic006G258700--Sobic004G298900 Sobic001G351400 Sobic001G351400 Sobic006G258700--Sobic001G351400 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic006G258700--Sobic004G300000 Sobic006G258700--Sobic001G286600 Sobic001G404500 Sobic001G404500 Sobic006G258700--Sobic001G404500 Sobic006G260800--Sobic004G298900 Sobic010G214100 Sobic010G214100 Sobic006G260800--Sobic010G214100 Sobic006G260800--Sobic002G112400 Sobic006G260800--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic006G260800--Sobic003G160800 Sobic006G260800--Sobic009G062400 Sobic005G001700 Sobic005G001700 Sobic006G260800--Sobic005G001700 Sobic004G211600 Sobic004G211600 Sobic006G260800--Sobic004G211600 Sobic009G140000 Sobic009G140000 Sobic006G260800--Sobic009G140000 Sobic006G101500 Sobic006G101500 Sobic001G183000--Sobic006G101500 Sobic002G258600 Sobic002G258600 Sobic001G183000--Sobic002G258600 Sobic009G237000 Sobic009G237000 Sobic001G183000--Sobic009G237000 Sobic001G134700 Sobic001G134700 Sobic001G183000--Sobic001G134700 Sobic001G183000--Sobic004G211600 Sobic001G183000--Sobic008G006100 Sobic001G183000--Sobic003G160800 Sobic001G183000--Sobic001G521200 Sobic001G183000--Sobic005G001700
Octagon: transcription factors


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