Gene annotation
Transcriptome id Sobic.009G016000.1
Synonym PPa4, Sb09g001530,PPa4, AtPPa4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 26976818)
soluble inorganic pyrophosphatase, putative, expressed
UniProt C5YYL5
Pfam PF00719
Panther DB PTHR10286 PTHR10286:SF13
NCBI CDD KOG1626; Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38
KEGG Orthology K01507; inorganic pyrophosphatase
Gene Ontology GO:0006796; phosphate-containing compound metabolic process GO:0005737cytoplasm GO:0004427inorganic diphosphatase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT3G53620 : pyrophosphorylase 4
RAP-DB (Rice) LOC_Os05g02310.1 : soluble inorganic pyrophosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a040901
Brachypodium KQK11796 , KQK11795 , KQK07732 , KQK07731 , PNT73691 , PNT73690
Barley HORVU1Hr1G075110.2 , HORVU6Hr1G068760.2 , HORVU1Hr1G075660.7 , HORVU1Hr1G075660.6 , HORVU1Hr1G075660.5 , HORVU1Hr1G075660.4 , HORVU1Hr1G075660.3 , HORVU1Hr1G075660.2 , HORVU1Hr1G075660.1 , HORVU1Hr1G005920.2 , HORVU1Hr1G005920.3 , HORVU1Hr1G005920.1 , HORVU1Hr1G005920.7 , HORVU1Hr1G005920.6 , HORVU1Hr1G005920.5 , HORVU1Hr1G005920.4 , HORVU1Hr1G005920.9 , HORVU6Hr1G068760.11 , HORVU6Hr1G068760.10 , HORVU6Hr1G068760.9 , HORVU6Hr1G068760.8 , HORVU1Hr1G075110.1 , HORVU6Hr1G068760.6 , HORVU6Hr1G068760.5 , HORVU6Hr1G068760.4 , HORVU6Hr1G068760.3 , HORVU1Hr1G075110.4 , HORVU6Hr1G068760.1 , HORVU6Hr1G068760.7 , HORVU1Hr1G005920.8
Wheat TraesCS1B02G049200 , TraesCS1A02G342700 , TraesCS6A02G272300 , TraesCS6D02G252400 , TraesCS1B02G355800 , TraesCS1A02G038300 , TraesCS2D02G587100 , TraesCS1D02G344800 , TraesCS3B02G077900 , TraesCS3B02G077900 , TraesCS3B02G077900 , TraesCS6B02G299800 , TraesCS1D02G344800
Populus PNT50339 , PNT50338


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cDNA sequences
Sobic.009G016000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
2 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.010G183600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
4 Sobic.008G180800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
5 Sobic.001G043000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
6 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
7 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
8 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
9 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
10 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
11 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
13 Sobic.004G322700 - -
14 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
15 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
16 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
17 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G112900 expressed protein -
19 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
20 Sobic.005G176100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-6-phosphate isomerase, putative, expressed K01809: manA, mannose-6-phosphate isomerase


Gene co-expression network
sample Sobic009G016000 Sobic009G016000 Sobic003G139500 Sobic003G139500 Sobic009G016000--Sobic003G139500 Sobic009G246300 Sobic009G246300 Sobic009G016000--Sobic009G246300 Sobic010G183600 Sobic010G183600 Sobic009G016000--Sobic010G183600 Sobic008G180800 Sobic008G180800 Sobic009G016000--Sobic008G180800 Sobic001G043000 Sobic001G043000 Sobic009G016000--Sobic001G043000 Sobic007G121300 Sobic007G121300 Sobic009G016000--Sobic007G121300 Sobic003G428600 Sobic003G428600 Sobic009G016000--Sobic003G428600 Sobic001G331600 Sobic001G331600 Sobic009G016000--Sobic001G331600 Sobic010G104700 Sobic010G104700 Sobic009G016000--Sobic010G104700 Sobic001G263100 Sobic001G263100 Sobic003G139500--Sobic001G263100 Sobic004G322700 Sobic004G322700 Sobic003G139500--Sobic004G322700 Sobic006G161500 Sobic006G161500 Sobic003G139500--Sobic006G161500 Sobic004G322600 Sobic004G322600 Sobic003G139500--Sobic004G322600 Sobic010G104800 Sobic010G104800 Sobic003G139500--Sobic010G104800 Sobic002G162400 Sobic002G162400 Sobic003G139500--Sobic002G162400 Sobic008G038500 Sobic008G038500 Sobic003G139500--Sobic008G038500 Sobic003G139500--Sobic001G331600 Sobic003G139500--Sobic001G043000 Sobic009G246300--Sobic004G322700 Sobic001G221800 Sobic001G221800 Sobic009G246300--Sobic001G221800 Sobic009G246300--Sobic003G139500 Sobic003G277600 Sobic003G277600 Sobic009G246300--Sobic003G277600 Sobic009G246300--Sobic004G322600 Sobic009G246300--Sobic009G016000 Sobic001G073300 Sobic001G073300 Sobic009G246300--Sobic001G073300 Sobic001G244600 Sobic001G244600 Sobic009G246300--Sobic001G244600 Sobic001G244700 Sobic001G244700 Sobic009G246300--Sobic001G244700 Sobic003G440300 Sobic003G440300 Sobic010G183600--Sobic003G440300 Sobic001G112900 Sobic001G112900 Sobic010G183600--Sobic001G112900 Sobic010G183600--Sobic009G016000 Sobic001G313000 Sobic001G313000 Sobic010G183600--Sobic001G313000 Sobic006G150800 Sobic006G150800 Sobic010G183600--Sobic006G150800 Sobic005G176100 Sobic005G176100 Sobic010G183600--Sobic005G176100 Sobic003G339200 Sobic003G339200 Sobic010G183600--Sobic003G339200 Sobic006G154800 Sobic006G154800 Sobic010G183600--Sobic006G154800 Sobic010G183600--Sobic007G121300 Sobic008G180800--Sobic010G104700 Sobic002G116000 Sobic002G116000 Sobic008G180800--Sobic002G116000 Sobic010G101000 Sobic010G101000 Sobic008G180800--Sobic010G101000 Sobic008G180800--Sobic003G428600 Sobic001G046000 Sobic001G046000 Sobic008G180800--Sobic001G046000 Sobic002G047400 Sobic002G047400 Sobic008G180800--Sobic002G047400 Sobic009G225600 Sobic009G225600 Sobic008G180800--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic008G180800--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic008G180800--Sobic003G186800 Sobic006G153400 Sobic006G153400 Sobic001G043000--Sobic006G153400 Sobic001G043000--Sobic003G139500 Sobic001G043000--Sobic010G104800 Sobic001G043000--Sobic001G073300 Sobic009G256100 Sobic009G256100 Sobic001G043000--Sobic009G256100 Sobic010G249700 Sobic010G249700 Sobic001G043000--Sobic010G249700 Sobic004G035900 Sobic004G035900 Sobic001G043000--Sobic004G035900 Sobic003G127800 Sobic003G127800 Sobic001G043000--Sobic003G127800 Sobic010G039500 Sobic010G039500 Sobic001G043000--Sobic010G039500 Sobic004G128900 Sobic004G128900 Sobic007G121300--Sobic004G128900 Sobic002G161400 Sobic002G161400 Sobic007G121300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic007G121300--Sobic004G344600 Sobic007G121300--Sobic001G331600 Sobic003G340300 Sobic003G340300 Sobic007G121300--Sobic003G340300 Sobic009G259100 Sobic009G259100 Sobic007G121300--Sobic009G259100 Sobic006G191500 Sobic006G191500 Sobic007G121300--Sobic006G191500 Sobic001G485100 Sobic001G485100 Sobic007G121300--Sobic001G485100 Sobic004G035100 Sobic004G035100 Sobic007G121300--Sobic004G035100 Sobic003G304300 Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic003G428600--Sobic010G101000 Sobic003G428600--Sobic003G186800 Sobic003G428600--Sobic010G104700 Sobic002G351200 Sobic002G351200 Sobic003G428600--Sobic002G351200 Sobic003G428600--Sobic009G225600 Sobic001G018000 Sobic001G018000 Sobic003G428600--Sobic001G018000 Sobic003G428600--Sobic001G112900 Sobic004G268400 Sobic004G268400 Sobic003G428600--Sobic004G268400 Sobic001G331600--Sobic001G485100 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic001G331600--Sobic002G161400 Sobic001G331600--Sobic001G046000 Sobic004G312600 Sobic004G312600 Sobic001G331600--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic001G331600--Sobic004G344600 Sobic010G104700--Sobic001G046000 Sobic010G104700--Sobic003G304300 Sobic010G104700--Sobic010G101000 Sobic010G104700--Sobic004G344600 Sobic010G104700--Sobic004G153900 Sobic010G104700--Sobic009G225600 Sobic010G104700--Sobic002G161400 Sobic010G104700--Sobic008G180800 Sobic010G104700--Sobic002G351200
Octagon: transcription factors


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