Gene annotation
Transcriptome id Sobic.002G111200.1
Synonym IBR1, SDRA, Sb02g009510
Functional annotation dehydrogenase/reductase SDR family member 2, putative, expressed
UniProt C5X487
Pfam PF08659
Panther DB PTHR24322 PTHR24322:SF502
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K11147; dehydrogenase/reductase SDR family member 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05530 : indole-3-butyric acid response 1
RAP-DB (Rice) LOC_Os09g04730.1 : dehydrogenase/reductase SDR family member 2, putative, expressed
MaizeGDB (Corn) Zm00025a045690
Brachypodium KQK07357
Barley HORVU5Hr1G049670.3 , HORVU5Hr1G049670.2 , HORVU5Hr1G049670.1 , HORVU0Hr1G012410.6 , HORVU0Hr1G012410.4 , HORVU0Hr1G012410.5 , HORVU0Hr1G012410.2 , HORVU0Hr1G012410.3 , HORVU0Hr1G012410.1
Wheat TraesCS5B02G161900 , TraesCS5D02G169300 , TraesCS5A02G164400 , TraesCS5A02G164400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G111200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G339500 expressed protein -
2 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
4 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
5 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
6 Sobic.008G118900 OsAPRL6 adenosine 5\'-phosphosulfate reductase-like OsAPRL6, expressed -
7 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase
8 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
9 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
10 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
11 Sobic.008G156700 phosphoribulokinase/Uridine kinase family protein, expressed -
12 Sobic.004G070700 GA16396-PA, putative, expressed -
13 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
14 Sobic.005G033200 expressed protein -
15 Sobic.009G243100 pex14, putative, expressed -
16 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
17 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
18 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
19 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
20 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin


Gene co-expression network
sample Sobic002G111200 Sobic002G111200 Sobic001G339500 Sobic001G339500 Sobic002G111200--Sobic001G339500 Sobic001G014800 Sobic001G014800 Sobic002G111200--Sobic001G014800 Sobic001G219300 Sobic001G219300 Sobic002G111200--Sobic001G219300 Sobic002G339600 Sobic002G339600 Sobic002G111200--Sobic002G339600 Sobic010G277100 Sobic010G277100 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G309900 Sobic002G309900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic009G004600 Sobic009G004600 Sobic002G111200--Sobic009G004600 Sobic001G339500--Sobic002G339600 Sobic001G339500--Sobic002G111200 Sobic003G349200 Sobic003G349200 Sobic001G339500--Sobic003G349200 Sobic006G215600 Sobic006G215600 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic007G033800 Sobic007G033800 Sobic001G339500--Sobic007G033800 Sobic006G011300 Sobic006G011300 Sobic001G339500--Sobic006G011300 Sobic003G224100 Sobic003G224100 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic001G219300--Sobic002G111200 Sobic004G080100 Sobic004G080100 Sobic001G219300--Sobic004G080100 Sobic003G055700 Sobic003G055700 Sobic001G219300--Sobic003G055700 Sobic010G049100 Sobic010G049100 Sobic001G219300--Sobic010G049100 Sobic009G257600 Sobic009G257600 Sobic001G219300--Sobic009G257600 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic006G244700 Sobic006G244700 Sobic001G219300--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic001G219300--Sobic008G032600 Sobic002G339600--Sobic001G339500 Sobic002G339600--Sobic006G215600 Sobic002G339600--Sobic002G111200 Sobic003G443500 Sobic003G443500 Sobic002G339600--Sobic003G443500 Sobic002G128900 Sobic002G128900 Sobic002G339600--Sobic002G128900 Sobic004G151500 Sobic004G151500 Sobic002G339600--Sobic004G151500 Sobic001G257700 Sobic001G257700 Sobic002G339600--Sobic001G257700 Sobic002G339600--Sobic002G309900 Sobic002G339600--Sobic007G033800 Sobic001G364600 Sobic001G364600 Sobic010G277100--Sobic001G364600 Sobic005G168600 Sobic005G168600 Sobic010G277100--Sobic005G168600 Sobic003G077900 Sobic003G077900 Sobic010G277100--Sobic003G077900 Sobic001G417900 Sobic001G417900 Sobic010G277100--Sobic001G417900 Sobic001G053000 Sobic001G053000 Sobic010G277100--Sobic001G053000 Sobic010G277100--Sobic002G111200 Sobic010G277100--Sobic010G049100 Sobic010G277100--Sobic001G014800 Sobic007G188300 Sobic007G188300 Sobic010G277100--Sobic007G188300 Sobic005G033200 Sobic005G033200 Sobic008G118900--Sobic005G033200 Sobic008G118900--Sobic002G111200 Sobic002G071000 Sobic002G071000 Sobic008G118900--Sobic002G071000 Sobic008G076800 Sobic008G076800 Sobic008G118900--Sobic008G076800 Sobic008G118900--Sobic009G004600 Sobic010G265300 Sobic010G265300 Sobic008G118900--Sobic010G265300 Sobic008G118900--Sobic001G417900 Sobic001G234200 Sobic001G234200 Sobic008G118900--Sobic001G234200 Sobic009G243100 Sobic009G243100 Sobic008G118900--Sobic009G243100 Sobic002G091600 Sobic002G091600 Sobic002G309900--Sobic002G091600 Sobic002G131200 Sobic002G131200 Sobic002G309900--Sobic002G131200 Sobic008G070800 Sobic008G070800 Sobic002G309900--Sobic008G070800 Sobic001G085600 Sobic001G085600 Sobic002G309900--Sobic001G085600 Sobic001G303100 Sobic001G303100 Sobic002G309900--Sobic001G303100 Sobic006G092000 Sobic006G092000 Sobic002G309900--Sobic006G092000 Sobic005G100600 Sobic005G100600 Sobic002G309900--Sobic005G100600 Sobic002G309900--Sobic002G111200 Sobic002G309900--Sobic001G257700 Sobic001G263000 Sobic001G263000 Sobic002G209400--Sobic001G263000 Sobic002G209400--Sobic006G244700 Sobic004G232800 Sobic004G232800 Sobic002G209400--Sobic004G232800 Sobic007G061400 Sobic007G061400 Sobic002G209400--Sobic007G061400 Sobic002G209400--Sobic007G188300 Sobic010G057900 Sobic010G057900 Sobic002G209400--Sobic010G057900 Sobic002G209400--Sobic002G111200 Sobic005G111900 Sobic005G111900 Sobic002G209400--Sobic005G111900 Sobic002G209400--Sobic001G014800 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.