Gene annotation
Transcriptome id Sobic.001G219300.1
Synonym Sb01g019280
Functional annotation lactate/malate dehydrogenase, putative, expressed
UniProt C5WYF2
Pfam PF00056 PF02866
Panther DB PTHR23382 PTHR23382:SF7
NCBI CDD -
KEGG Orthology K00025; malate dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0016615malate dehydrogenase activity GO:0006108malate metabolic process


Orthologs (automatic annotation)
TAIR AT5G43330 : Lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os10g33800.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a006595 , Zm00025a017625
Brachypodium KQJ97102
Barley HORVU1Hr1G041250.8 , HORVU1Hr1G041250.1 , HORVU1Hr1G041250.3 , HORVU1Hr1G041250.2 , HORVU1Hr1G041250.5 , HORVU1Hr1G041250.4 , HORVU1Hr1G041250.7 , HORVU1Hr1G041250.6
Wheat TraesCS1B02G172400 , TraesCS1A02G155200 , TraesCS1D02G153900
Populus PNT15185 , PNT25078 , PNT25079 , PNT25077 , PNT25074 , PNT25075


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cDNA sequences
Sobic.001G219300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
2 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
3 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
4 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
5 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
6 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
7 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
8 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
9 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
10 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
11 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
12 Sobic.001G013500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
13 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
14 Sobic.005G033200 expressed protein -
15 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
16 Sobic.010G262433 - -
17 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
19 Sobic.009G225000 transmembrane protein 93, putative, expressed -
20 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2


Gene co-expression network
sample Sobic001G219300 Sobic001G219300 Sobic002G111200 Sobic002G111200 Sobic001G219300--Sobic002G111200 Sobic004G080100 Sobic004G080100 Sobic001G219300--Sobic004G080100 Sobic003G055700 Sobic003G055700 Sobic001G219300--Sobic003G055700 Sobic010G049100 Sobic010G049100 Sobic001G219300--Sobic010G049100 Sobic009G257600 Sobic009G257600 Sobic001G219300--Sobic009G257600 Sobic001G014800 Sobic001G014800 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic006G244700 Sobic006G244700 Sobic001G219300--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic001G219300--Sobic008G032600 Sobic001G339500 Sobic001G339500 Sobic002G111200--Sobic001G339500 Sobic002G111200--Sobic001G014800 Sobic002G111200--Sobic001G219300 Sobic002G339600 Sobic002G339600 Sobic002G111200--Sobic002G339600 Sobic010G277100 Sobic010G277100 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G309900 Sobic002G309900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic009G004600 Sobic009G004600 Sobic002G111200--Sobic009G004600 Sobic004G080100--Sobic010G049100 Sobic004G067100 Sobic004G067100 Sobic004G080100--Sobic004G067100 Sobic003G246700 Sobic003G246700 Sobic004G080100--Sobic003G246700 Sobic002G226900 Sobic002G226900 Sobic004G080100--Sobic002G226900 Sobic004G080100--Sobic001G219300 Sobic004G080100--Sobic008G032600 Sobic003G139800 Sobic003G139800 Sobic004G080100--Sobic003G139800 Sobic008G179900 Sobic008G179900 Sobic004G080100--Sobic008G179900 Sobic008G089900 Sobic008G089900 Sobic004G080100--Sobic008G089900 Sobic007G136100 Sobic007G136100 Sobic003G055700--Sobic007G136100 Sobic005G044800 Sobic005G044800 Sobic003G055700--Sobic005G044800 Sobic003G055700--Sobic001G219300 Sobic001G048200 Sobic001G048200 Sobic003G055700--Sobic001G048200 Sobic003G055700--Sobic006G244700 Sobic003G055700--Sobic008G032600 Sobic009G139900 Sobic009G139900 Sobic003G055700--Sobic009G139900 Sobic003G372000 Sobic003G372000 Sobic003G055700--Sobic003G372000 Sobic003G055700--Sobic004G080100 Sobic010G049100--Sobic004G080100 Sobic010G049100--Sobic003G246700 Sobic010G049100--Sobic001G014800 Sobic010G049100--Sobic008G032600 Sobic004G121300 Sobic004G121300 Sobic010G049100--Sobic004G121300 Sobic010G049100--Sobic002G226900 Sobic004G296400 Sobic004G296400 Sobic010G049100--Sobic004G296400 Sobic010G049100--Sobic009G139900 Sobic004G136300 Sobic004G136300 Sobic010G049100--Sobic004G136300 Sobic001G283200 Sobic001G283200 Sobic009G257600--Sobic001G283200 Sobic004G321900 Sobic004G321900 Sobic009G257600--Sobic004G321900 Sobic002G166900 Sobic002G166900 Sobic009G257600--Sobic002G166900 Sobic004G310500 Sobic004G310500 Sobic009G257600--Sobic004G310500 Sobic009G257600--Sobic009G005900 Sobic006G252200 Sobic006G252200 Sobic009G257600--Sobic006G252200 Sobic009G067000 Sobic009G067000 Sobic009G257600--Sobic009G067000 Sobic004G082900 Sobic004G082900 Sobic009G257600--Sobic004G082900 Sobic004G216400 Sobic004G216400 Sobic009G257600--Sobic004G216400 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic001G263000 Sobic001G263000 Sobic006G244700--Sobic001G263000 Sobic006G244700--Sobic001G048200 Sobic006G244700--Sobic005G044800 Sobic007G188300 Sobic007G188300 Sobic006G244700--Sobic007G188300 Sobic004G130900 Sobic004G130900 Sobic006G244700--Sobic004G130900 Sobic006G244700--Sobic009G004600 Sobic003G261400 Sobic003G261400 Sobic006G244700--Sobic003G261400 Sobic006G244700--Sobic002G209400 Sobic004G081800 Sobic004G081800 Sobic006G244700--Sobic004G081800 Sobic008G032600--Sobic010G049100 Sobic008G156700 Sobic008G156700 Sobic008G032600--Sobic008G156700 Sobic008G032600--Sobic004G080100 Sobic009G133600 Sobic009G133600 Sobic008G032600--Sobic009G133600 Sobic005G168600 Sobic005G168600 Sobic008G032600--Sobic005G168600 Sobic003G110400 Sobic003G110400 Sobic008G032600--Sobic003G110400 Sobic008G032600--Sobic003G055700 Sobic008G032600--Sobic006G244700 Sobic008G032600--Sobic008G033500
Octagon: transcription factors


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