Gene annotation
Transcriptome id Sobic.001G013500.1
Synonym NRPD8B, Sb01g001330, NRPB8B, NRPE8B
Functional annotation DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed
UniProt C5WSX7
Pfam PF03870
Panther DB PTHR10917
NCBI CDD KOG3400; RNA polymerase subunit 8
KEGG Orthology K03016; RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
Gene Ontology GO:0006351; transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G59600 : RNA polymerase Rpb8
RAP-DB (Rice) LOC_Os06g48230.1 : DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed
MaizeGDB (Corn) Zm00025a016340
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G013500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G106700 expressed protein -
2 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
3 Sobic.001G460600 RING zinc finger protein-like, putative, expressed -
4 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
5 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
6 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
7 Sobic.009G225000 transmembrane protein 93, putative, expressed -
8 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
9 Sobic.010G277800 lysM domain containing protein, putative, expressed -
10 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
11 Sobic.003G261500 lipase, putative, expressed -
12 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
13 Sobic.003G117900 protein kinase, putative, expressed -
14 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
15 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
16 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
17 Sobic.009G222500 expressed protein -
18 Sobic.006G090000 DUF1771 domain containing protein, putative, expressed -
19 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
20 Sobic.003G291500 elongation factor, putative, expressed K03234: elongation factor 2


Gene co-expression network
sample Sobic001G013500 Sobic001G013500 Sobic001G106700 Sobic001G106700 Sobic001G013500--Sobic001G106700 Sobic009G257600 Sobic009G257600 Sobic001G013500--Sobic009G257600 Sobic001G460600 Sobic001G460600 Sobic001G013500--Sobic001G460600 Sobic002G166900 Sobic002G166900 Sobic001G013500--Sobic002G166900 Sobic004G067100 Sobic004G067100 Sobic001G013500--Sobic004G067100 Sobic001G219300 Sobic001G219300 Sobic001G013500--Sobic001G219300 Sobic009G225000 Sobic009G225000 Sobic001G013500--Sobic009G225000 Sobic001G461900 Sobic001G461900 Sobic001G013500--Sobic001G461900 Sobic010G277800 Sobic010G277800 Sobic001G013500--Sobic010G277800 Sobic003G370900 Sobic003G370900 Sobic001G106700--Sobic003G370900 Sobic003G117900 Sobic003G117900 Sobic001G106700--Sobic003G117900 Sobic001G007200 Sobic001G007200 Sobic001G106700--Sobic001G007200 Sobic001G473300 Sobic001G473300 Sobic001G106700--Sobic001G473300 Sobic001G106700--Sobic001G460600 Sobic001G415500 Sobic001G415500 Sobic001G106700--Sobic001G415500 Sobic002G134001 Sobic002G134001 Sobic001G106700--Sobic002G134001 Sobic007G216100 Sobic007G216100 Sobic001G106700--Sobic007G216100 Sobic009G185800 Sobic009G185800 Sobic001G106700--Sobic009G185800 Sobic001G283200 Sobic001G283200 Sobic009G257600--Sobic001G283200 Sobic004G321900 Sobic004G321900 Sobic009G257600--Sobic004G321900 Sobic009G257600--Sobic002G166900 Sobic004G310500 Sobic004G310500 Sobic009G257600--Sobic004G310500 Sobic009G005900 Sobic009G005900 Sobic009G257600--Sobic009G005900 Sobic006G252200 Sobic006G252200 Sobic009G257600--Sobic006G252200 Sobic009G067000 Sobic009G067000 Sobic009G257600--Sobic009G067000 Sobic004G082900 Sobic004G082900 Sobic009G257600--Sobic004G082900 Sobic004G216400 Sobic004G216400 Sobic009G257600--Sobic004G216400 Sobic001G460600--Sobic009G225000 Sobic001G460600--Sobic001G106700 Sobic009G135600 Sobic009G135600 Sobic001G460600--Sobic009G135600 Sobic001G460600--Sobic003G370900 Sobic010G000900 Sobic010G000900 Sobic001G460600--Sobic010G000900 Sobic001G460600--Sobic003G117900 Sobic001G460600--Sobic001G461900 Sobic004G289800 Sobic004G289800 Sobic001G460600--Sobic004G289800 Sobic003G323600 Sobic003G323600 Sobic001G460600--Sobic003G323600 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic002G166900--Sobic004G067100 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic004G080100 Sobic004G080100 Sobic004G067100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic004G067100--Sobic003G246700 Sobic004G067100--Sobic002G166900 Sobic004G067100--Sobic003G117900 Sobic001G508100 Sobic001G508100 Sobic004G067100--Sobic001G508100 Sobic004G067100--Sobic004G167400 Sobic002G226900 Sobic002G226900 Sobic004G067100--Sobic002G226900 Sobic004G067100--Sobic006G090000 Sobic003G077900 Sobic003G077900 Sobic004G067100--Sobic003G077900 Sobic002G111200 Sobic002G111200 Sobic001G219300--Sobic002G111200 Sobic001G219300--Sobic004G080100 Sobic003G055700 Sobic003G055700 Sobic001G219300--Sobic003G055700 Sobic010G049100 Sobic010G049100 Sobic001G219300--Sobic010G049100 Sobic001G219300--Sobic009G257600 Sobic001G014800 Sobic001G014800 Sobic001G219300--Sobic001G014800 Sobic001G219300--Sobic009G005900 Sobic006G244700 Sobic006G244700 Sobic001G219300--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic001G219300--Sobic008G032600 Sobic006G281800 Sobic006G281800 Sobic009G225000--Sobic006G281800 Sobic009G225000--Sobic001G283200 Sobic004G194900 Sobic004G194900 Sobic009G225000--Sobic004G194900 Sobic004G181900 Sobic004G181900 Sobic009G225000--Sobic004G181900 Sobic009G225000--Sobic001G461900 Sobic007G142500 Sobic007G142500 Sobic009G225000--Sobic007G142500 Sobic009G225000--Sobic001G460600 Sobic004G206700 Sobic004G206700 Sobic009G225000--Sobic004G206700 Sobic003G349300 Sobic003G349300 Sobic009G225000--Sobic003G349300 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic010G042100 Sobic010G042100 Sobic010G277800--Sobic010G042100 Sobic001G040800 Sobic001G040800 Sobic010G277800--Sobic001G040800 Sobic010G277800--Sobic009G185800 Sobic007G088000 Sobic007G088000 Sobic010G277800--Sobic007G088000 Sobic002G204100 Sobic002G204100 Sobic010G277800--Sobic002G204100 Sobic005G034400 Sobic005G034400 Sobic010G277800--Sobic005G034400 Sobic004G272800 Sobic004G272800 Sobic010G277800--Sobic004G272800 Sobic002G291200 Sobic002G291200 Sobic010G277800--Sobic002G291200 Sobic003G253000 Sobic003G253000 Sobic010G277800--Sobic003G253000
Octagon: transcription factors


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