Gene annotation
Transcriptome id Sobic.003G291500.1
Synonym Sb03g034200, LOS1
Functional annotation elongation factor, putative, expressed
UniProt C5XJZ3
Pfam PF14492 PF03144 PF00679 PF03764 PF00009
Panther DB PTHR23115 PTHR23115:SF131
NCBI CDD -
KEGG Orthology K03234; elongation factor 2
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G56070 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os04g02820.1 : elongation factor, putative, expressed
MaizeGDB (Corn) Zm00025a040074 , Zm00025a008947 , Zm00025a052101 , Zm00025a008954 , Zm00025a008952
Brachypodium KQJ99646 , KQJ99645 , KQK08953 , KQJ99594 , KQJ99595 , PNT72487
Barley HORVU5Hr1G116710.9 , HORVU7Hr1G106150.5 , HORVU5Hr1G116580.11 , HORVU7Hr1G106150.4 , HORVU5Hr1G116710.8 , HORVU7Hr1G106150.2 , HORVU7Hr1G106150.3 , HORVU7Hr1G106150.1 , HORVU5Hr1G116710.3 , HORVU5Hr1G116710.2 , HORVU5Hr1G116710.1 , HORVU5Hr1G116710.7 , HORVU5Hr1G116710.6 , HORVU5Hr1G116710.5 , HORVU5Hr1G116710.4 , HORVU5Hr1G116580.6 , HORVU5Hr1G116580.7 , HORVU5Hr1G116580.4 , HORVU5Hr1G116580.5 , HORVU5Hr1G116580.2 , HORVU5Hr1G116580.3 , HORVU5Hr1G116580.1 , HORVU5Hr1G116580.8 , HORVU3Hr1G057880.1 , HORVU3Hr1G057880.3 , HORVU3Hr1G057880.2 , HORVU3Hr1G057890.2 , HORVU3Hr1G057890.3 , HORVU3Hr1G057890.1 , HORVU5Hr1G116580.9
Wheat TraesCS3A02G232300 , TraesCS4A02G363800 , TraesCS7A02G461100 , TraesCS3B02G261500 , TraesCS5D02G509600 , TraesCS5D02G509800 , TraesCS4A02G363700 , TraesCS2A02G234500 , TraesCS7A02G288600 , TraesCS5B02G509500 , TraesCS3D02G220900 , TraesCS1D02G023700 , TraesCS5D02G509700 , TraesCS6A02G189500 , TraesCS5B02G509600 , TraesCS5B02G509700 , TraesCS7D02G449300 , TraesCS7B02G362600
Populus -


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cDNA sequences
Sobic.003G291500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G101400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
2 Sobic.001G294200 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
3 Sobic.010G262433 - -
4 Sobic.001G106700 expressed protein -
5 Sobic.008G118900 OsAPRL6 adenosine 5\'-phosphosulfate reductase-like OsAPRL6, expressed -
6 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
7 Sobic.001G013500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
8 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
9 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
10 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
11 Sobic.009G222500 expressed protein -
12 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
13 Sobic.004G348900 expressed protein -
14 Sobic.009G129900 endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
15 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
16 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
17 Sobic.003G261500 lipase, putative, expressed -
18 Sobic.008G076800 expressed protein -
19 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
20 Sobic.006G049700 SAM domain family protein, expressed -


Gene co-expression network
sample Sobic003G291500 Sobic003G291500 Sobic009G101400 Sobic009G101400 Sobic003G291500--Sobic009G101400 Sobic001G294200 Sobic001G294200 Sobic003G291500--Sobic001G294200 Sobic010G262433 Sobic010G262433 Sobic003G291500--Sobic010G262433 Sobic001G106700 Sobic001G106700 Sobic003G291500--Sobic001G106700 Sobic008G118900 Sobic008G118900 Sobic003G291500--Sobic008G118900 Sobic002G071000 Sobic002G071000 Sobic003G291500--Sobic002G071000 Sobic001G013500 Sobic001G013500 Sobic003G291500--Sobic001G013500 Sobic003G264200 Sobic003G264200 Sobic003G291500--Sobic003G264200 Sobic001G461900 Sobic001G461900 Sobic003G291500--Sobic001G461900 Sobic009G101400--Sobic003G291500 Sobic009G101400--Sobic001G294200 Sobic001G365800 Sobic001G365800 Sobic009G101400--Sobic001G365800 Sobic003G327100 Sobic003G327100 Sobic009G101400--Sobic003G327100 Sobic003G081700 Sobic003G081700 Sobic009G101400--Sobic003G081700 Sobic009G129900 Sobic009G129900 Sobic009G101400--Sobic009G129900 Sobic001G530500 Sobic001G530500 Sobic009G101400--Sobic001G530500 Sobic006G269000 Sobic006G269000 Sobic009G101400--Sobic006G269000 Sobic009G101400--Sobic001G106700 Sobic003G078800 Sobic003G078800 Sobic001G294200--Sobic003G078800 Sobic001G543300 Sobic001G543300 Sobic001G294200--Sobic001G543300 Sobic006G262900 Sobic006G262900 Sobic001G294200--Sobic006G262900 Sobic001G512600 Sobic001G512600 Sobic001G294200--Sobic001G512600 Sobic009G133400 Sobic009G133400 Sobic001G294200--Sobic009G133400 Sobic002G129000 Sobic002G129000 Sobic001G294200--Sobic002G129000 Sobic001G294200--Sobic001G365800 Sobic004G301900 Sobic004G301900 Sobic001G294200--Sobic004G301900 Sobic001G078800 Sobic001G078800 Sobic001G294200--Sobic001G078800 Sobic004G216400 Sobic004G216400 Sobic010G262433--Sobic004G216400 Sobic001G468600 Sobic001G468600 Sobic010G262433--Sobic001G468600 Sobic010G262433--Sobic002G071000 Sobic001G021400 Sobic001G021400 Sobic010G262433--Sobic001G021400 Sobic009G257600 Sobic009G257600 Sobic010G262433--Sobic009G257600 Sobic006G002201 Sobic006G002201 Sobic010G262433--Sobic006G002201 Sobic004G310500 Sobic004G310500 Sobic010G262433--Sobic004G310500 Sobic002G332900 Sobic002G332900 Sobic010G262433--Sobic002G332900 Sobic001G219300 Sobic001G219300 Sobic010G262433--Sobic001G219300 Sobic003G370900 Sobic003G370900 Sobic001G106700--Sobic003G370900 Sobic003G117900 Sobic003G117900 Sobic001G106700--Sobic003G117900 Sobic001G007200 Sobic001G007200 Sobic001G106700--Sobic001G007200 Sobic001G473300 Sobic001G473300 Sobic001G106700--Sobic001G473300 Sobic001G460600 Sobic001G460600 Sobic001G106700--Sobic001G460600 Sobic001G415500 Sobic001G415500 Sobic001G106700--Sobic001G415500 Sobic002G134001 Sobic002G134001 Sobic001G106700--Sobic002G134001 Sobic007G216100 Sobic007G216100 Sobic001G106700--Sobic007G216100 Sobic009G185800 Sobic009G185800 Sobic001G106700--Sobic009G185800 Sobic005G033200 Sobic005G033200 Sobic008G118900--Sobic005G033200 Sobic002G111200 Sobic002G111200 Sobic008G118900--Sobic002G111200 Sobic008G118900--Sobic002G071000 Sobic008G076800 Sobic008G076800 Sobic008G118900--Sobic008G076800 Sobic009G004600 Sobic009G004600 Sobic008G118900--Sobic009G004600 Sobic010G265300 Sobic010G265300 Sobic008G118900--Sobic010G265300 Sobic001G417900 Sobic001G417900 Sobic008G118900--Sobic001G417900 Sobic001G234200 Sobic001G234200 Sobic008G118900--Sobic001G234200 Sobic009G243100 Sobic009G243100 Sobic008G118900--Sobic009G243100 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic001G013500--Sobic001G106700 Sobic001G013500--Sobic009G257600 Sobic001G013500--Sobic001G460600 Sobic002G166900 Sobic002G166900 Sobic001G013500--Sobic002G166900 Sobic004G067100 Sobic004G067100 Sobic001G013500--Sobic004G067100 Sobic001G013500--Sobic001G219300 Sobic009G225000 Sobic009G225000 Sobic001G013500--Sobic009G225000 Sobic001G013500--Sobic001G461900 Sobic010G277800 Sobic010G277800 Sobic001G013500--Sobic010G277800 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic001G080700 Sobic001G080700 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic009G222500 Sobic009G222500 Sobic003G264200--Sobic009G222500 Sobic003G264200--Sobic006G049700 Sobic006G101700 Sobic006G101700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic009G165800 Sobic009G165800 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700
Octagon: transcription factors


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