Gene annotation
Transcriptome id Sobic.004G130600.1,Sobic.004G130600.2
Synonym SOS3, SbCBL05, ATSOS3, calcineurin B-like proteins, CBL4, Sb04g011330
Functional annotation Cellular calcium signals (PubMedID : 19860013)
calcineurin B, putative, expressed
UniProt C4P7Y4
Pfam PF13499 PF00036
Panther DB PTHR23056 PTHR23056:SF45
NCBI CDD KOG0034; Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein
KEGG Orthology K06268; PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G24270 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os02g18880.1 : calcineurin B, putative, expressed
MaizeGDB (Corn) Zm00025a034338
Brachypodium PNT66363 , PNT66364
Barley HORVU1Hr1G064470.1 , HORVU1Hr1G064470.2 , HORVU1Hr1G064470.4 , HORVU1Hr1G064470.5 , HORVU1Hr1G064470.6 , HORVU1Hr1G064470.7 , HORVU1Hr1G064470.8 , HORVU1Hr1G064470.10
Wheat TraesCS1D02G261200 , TraesCS1D02G346400 , TraesCS1B02G357200 , TraesCS1A02G261200 , TraesCS1A02G261200 , TraesCS1B02G272000 , TraesCS1B02G272000 , TraesCS1D02G346500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
2 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
3 Sobic.001G043000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
4 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
5 Sobic.009G256100 expressed protein -
6 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
7 Sobic.004G323800 peptide chain release factor protein, putative, expressed K02836: peptide chain release factor 2
8 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
9 Sobic.003G355200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
10 Sobic.001G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
11 Sobic.010G227900 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
14 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
15 Sobic.010G259001 - -
16 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
17 Sobic.001G540300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G185800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.007G006400 - -
20 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G130600 Sobic004G130600 Sobic010G104800 Sobic010G104800 Sobic004G130600--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic004G130600--Sobic001G073300 Sobic001G043000 Sobic001G043000 Sobic004G130600--Sobic001G043000 Sobic001G244600 Sobic001G244600 Sobic004G130600--Sobic001G244600 Sobic009G256100 Sobic009G256100 Sobic004G130600--Sobic009G256100 Sobic002G390100 Sobic002G390100 Sobic004G130600--Sobic002G390100 Sobic004G323800 Sobic004G323800 Sobic004G130600--Sobic004G323800 Sobic006G161500 Sobic006G161500 Sobic004G130600--Sobic006G161500 Sobic003G355200 Sobic003G355200 Sobic004G130600--Sobic003G355200 Sobic010G104800--Sobic001G073300 Sobic006G153400 Sobic006G153400 Sobic010G104800--Sobic006G153400 Sobic010G104800--Sobic009G256100 Sobic007G006400 Sobic007G006400 Sobic010G104800--Sobic007G006400 Sobic008G129900 Sobic008G129900 Sobic010G104800--Sobic008G129900 Sobic004G112100 Sobic004G112100 Sobic010G104800--Sobic004G112100 Sobic010G104800--Sobic001G244600 Sobic010G104800--Sobic006G161500 Sobic010G104800--Sobic002G390100 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic003G409700 Sobic003G409700 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic010G231300 Sobic010G231300 Sobic001G073300--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic001G043000--Sobic006G153400 Sobic003G139500 Sobic003G139500 Sobic001G043000--Sobic003G139500 Sobic001G043000--Sobic010G104800 Sobic001G043000--Sobic001G073300 Sobic001G043000--Sobic009G256100 Sobic010G249700 Sobic010G249700 Sobic001G043000--Sobic010G249700 Sobic004G035900 Sobic004G035900 Sobic001G043000--Sobic004G035900 Sobic003G127800 Sobic003G127800 Sobic001G043000--Sobic003G127800 Sobic010G039500 Sobic010G039500 Sobic001G043000--Sobic010G039500 Sobic001G244600--Sobic008G129900 Sobic001G244600--Sobic010G104800 Sobic001G244600--Sobic006G161500 Sobic001G244600--Sobic009G256100 Sobic001G244600--Sobic001G073300 Sobic007G058100 Sobic007G058100 Sobic001G244600--Sobic007G058100 Sobic001G217900 Sobic001G217900 Sobic001G244600--Sobic001G217900 Sobic008G038500 Sobic008G038500 Sobic001G244600--Sobic008G038500 Sobic001G244600--Sobic010G231300 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic009G256100--Sobic007G058100 Sobic007G105500 Sobic007G105500 Sobic009G256100--Sobic007G105500 Sobic002G404800 Sobic002G404800 Sobic009G256100--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic009G256100--Sobic003G185900 Sobic004G215800 Sobic004G215800 Sobic009G256100--Sobic004G215800 Sobic009G256100--Sobic008G129900 Sobic003G036200 Sobic003G036200 Sobic002G390100--Sobic003G036200 Sobic002G390100--Sobic002G404800 Sobic002G390100--Sobic009G256100 Sobic005G068700 Sobic005G068700 Sobic002G390100--Sobic005G068700 Sobic002G390100--Sobic004G215800 Sobic002G390100--Sobic007G105500 Sobic002G390100--Sobic003G042900 Sobic002G390100--Sobic010G104800 Sobic002G390100--Sobic001G073300 Sobic004G323800--Sobic002G390100 Sobic002G196600 Sobic002G196600 Sobic004G323800--Sobic002G196600 Sobic004G323800--Sobic001G244600 Sobic010G181100 Sobic010G181100 Sobic004G323800--Sobic010G181100 Sobic004G323800--Sobic009G256100 Sobic006G120500 Sobic006G120500 Sobic004G323800--Sobic006G120500 Sobic006G093100 Sobic006G093100 Sobic004G323800--Sobic006G093100 Sobic004G323800--Sobic005G068700 Sobic004G323800--Sobic003G036200 Sobic004G128900 Sobic004G128900 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G235400 Sobic006G235400 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic001G221800 Sobic001G221800 Sobic003G355200--Sobic001G221800 Sobic006G214300 Sobic006G214300 Sobic003G355200--Sobic006G214300 Sobic003G355200--Sobic003G139500 Sobic008G096700 Sobic008G096700 Sobic003G355200--Sobic008G096700 Sobic003G282000 Sobic003G282000 Sobic003G355200--Sobic003G282000 Sobic003G355200--Sobic009G194500 Sobic009G038900 Sobic009G038900 Sobic003G355200--Sobic009G038900 Sobic003G314000 Sobic003G314000 Sobic003G355200--Sobic003G314000 Sobic003G355200--Sobic002G196600
Octagon: transcription factors


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